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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g06160 | ||||||||
Common Name | GSCOC_T00040978001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 29921.4 Da PI: 11.0835 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1e-17 | 20 | 98 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r+ +p +f+++ +g+ s + + + g++W++k+ +++ l++GW++F+++ngL+ gDfvvF+++g++ f v vf++ Cc08_g06160 20 FNNRIKIPPSFINHLDGE-MYSEDHAVLRRGGKKWQLKV--TNQC----LENGWRKFAQENGLEIGDFVVFRHEGNMVF--EVLVFDT 98 5789********666655.45668889999*********..9998....*************************99999..7877775 PP | |||||||
2 | B3 | 45 | 1.9e-14 | 150 | 235 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +lk +r+ lp fa+e+g+++++ +++l+d++ r+W+++l ++ +++++GW e angLk gD + ++l++ +++++ +k++ Cc08_g06160 150 FNLKYRRIHLPMAFARENGLSSRRC-QMILKDQRKRKWKLQL--GYFGSNVYIGRGWFECQTANGLKIGDRFALELIS-NKKKPIMKIRG 235 5678899***********9997665.9***************..5555569**************************9.56668888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-21 | 6 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-19 | 7 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.001 | 9 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.94E-16 | 10 | 97 | No hit | No description |
SMART | SM01019 | 2.3E-16 | 12 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-14 | 20 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-15 | 136 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-16 | 137 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.42E-12 | 141 | 234 | No hit | No description |
PROSITE profile | PS50863 | 11.194 | 142 | 236 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-12 | 143 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 148 | 234 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MATAIPLKSP HFFKPILPGF NNRIKIPPSF INHLDGEMYS EDHAVLRRGG KKWQLKVTNQ 60 CLENGWRKFA QENGLEIGDF VVFRHEGNMV FEVLVFDTTK NFHILLRKML LQLKQKGRLW 120 QIVLSNSHLM VNRAVLEPAH PHFISSLKPF NLKYRRIHLP MAFARENGLS SRRCQMILKD 180 QRKRKWKLQL GYFGSNVYIG RGWFECQTAN GLKIGDRFAL ELISNKKKPI MKIRGKFLST 240 HLSFYRQKVS LACLLM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 183 | RRCQMILKDQRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A068V1D6 | 0.0 | A0A068V1D6_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 3e-30 | B3 family protein |