PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g05820

Common Name

GSCOC_T00024373001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Protein Properties

Length: 275aa MW: 31740.5 Da PI: 9.9897

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g05820	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50	5.2e-16	176	265	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp +f++++ +k ++ t+tl de+ +++ k+ k++ l++GW++F +++L +gD +vF+l++ ++f +v ++r Cc08_g05820 176 FVKPMLQSHVTGGFWLGLPVQFCKTYL-PK-RDETVTLVDEQEEEYPTKYLAVKTG----LSGGWRGFSIEHELVDGDALVFQLIEPTKF--KVYIIR 265 89*******************9995.33.5669***********656665....**********************987777..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.9E-21	169	266	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-24	169	267	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.51E-25	174	265	No hit	No description
SMART	SM01019	8.1E-24	176	267	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.871	176	267	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.1E-14	176	265	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MVVSKKGALA YEERRHERLE QNKKKLEQLN LTKLSQALHS TISPKPSPMK KVKPKVARQP 60 VDPSTIRRSS RVADKPPPNY KEIYLLFQLC NKRSVLRHFD RRSLPYFPGC SVVNLRSLYY 120 LVLWQVPIEP LGRPRSYRYS RRDLSNRVYA SDEDREYAHE RAEVLQSGLD SKIPSFVKPM 180 LQSHVTGGFW LGLPVQFCKT YLPKRDETVT LVDEQEEEYP TKYLAVKTGL SGGWRGFSIE 240 HELVDGDALV FQLIEPTKFK VYIIRVNQAE DSSN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084372.1	1e-151	B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	7e-77	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A068UHY5	0.0	A0A068UHY5_COFCA; Uncharacterized protein
STRING	XP_009612757.1	1e-115	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-74	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]