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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cc08_g05370 |
| Common Name | GSCOC_T00024299001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
HSF |
| Protein Properties |
Length: 389aa MW: 43597 Da PI: 6.5327 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc08_g05370 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 102.6 | 3.5e-32 | 78 | 169 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl k+y+i++++e+ ++isws++g+sf+v+d+++fa +vL kyF+h+nf+SFv QLn+YgF+k++ ++ eF++ +F+kgkk+ l+kik
Cc08_g05370 78 FLLKVYDIVKNPEIYSIISWSSSGTSFIVWDPHRFAAEVLGKYFRHNNFSSFVCQLNTYGFRKINWDR---------LEFQNAWFQKGKKSWLKKIK 165
9****************************************************************999.........78****************** PP
XXXX CS
HSF_DNA-bind 99 rkks 102
r+ +
Cc08_g05370 166 RRIQ 169
*975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MKATNQETSE VTNSTKYELK NGENEGERVN PTIPMGTDVS ESSSNAIVTA AVAVSTTPLA 60
KEGYANGASS RVRAPPPFLL KVYDIVKNPE IYSIISWSSS GTSFIVWDPH RFAAEVLGKY 120
FRHNNFSSFV CQLNTYGFRK INWDRLEFQN AWFQKGKKSW LKKIKRRIQG TQNAHLLKPL 180
EIEGQLSLSR EQKKFESLMQ EHDALKVETM KLKDMEANLV KEMETLEKQA QCITSKQQNM 240
LKYMIHEVLI RKKEMQSNDA ANDQGSGGRQ SIESSVELLY EGGTSHGSQK NSPRAQSGTG 300
KTFSNVDLST AIQEEEDCTV SMGKFSNFYT AVYSSLEKQL MDDISCENVA EEKRANLQQN 360
DVIPLEDLIE GPADWNEFAK GIGNKARS*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5hdg_A | 1e-22 | 76 | 168 | 8 | 111 | Heat shock factor protein 1 |
| 5hdn_A | 1e-22 | 76 | 168 | 8 | 111 | Heat shock factor protein 1 |
| 5hdn_B | 1e-22 | 76 | 168 | 8 | 111 | Heat shock factor protein 1 |
| 5hdn_C | 1e-22 | 76 | 168 | 8 | 111 | Heat shock factor protein 1 |
| 5hdn_D | 1e-22 | 76 | 168 | 8 | 111 | Heat shock factor protein 1 |
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