PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g04760
Common NameGSCOC_T00042498001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 511aa    MW: 57039 Da    PI: 6.6273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g04760genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS981.4e-302213951184
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetsekn...sseelaalklfsevsPilkf 93 
                  lv+ Ll+ Ae v+++++e+a +lL r  +l+s +g++++Rl+ yf  AL++r+ r++ +++     ++++ +      +s  ++a  + ++  P+ ++
  Cc08_g04760 221 LVQYLLASAELVTKKQFERAGKLLLRCDKLSSDQGNTIERLVYYFSGALHERIDRTTGTVSPEGlgKMQSLD--MldmMSGLTSAKIAMQKSVPFGQV 316
                  6899***************************************************55555544322222222..23434444444445********** PP

         GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                  s+++  q +l+ v+ ++++Hi+D++i  G+++  L+qaLa+R+++p       ++      k ++eetg++La+fA++l+++f+ n++ ++
  Cc08_g04760 317 SQIAGTQGVLDHVADATKIHIVDLEIRTGMHYTILMQALATRSQNP-------IEY----LKAKIEETGRQLASFAQALKLKFSLNII-MN 395
                  ******************************************9885.......555....6789**********************95.54 PP
2GRAS63.34.8e-20395489281374
         GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +r+ vE  +l+++i+n+va+eg+er+ r+ +++ W++ + ++G+ +v+ls + + qa+l+l++++ +   +++++ + l++gWk+ p+ s+SaW+
  Cc08_g04760 395 NRMIVESIYLSQAIRNIVATEGEERTIRQVSVNVWKAFFAHFGMVQVELSMSSMYQASLVLKNFEcGSSCTLNKDGKGLIIGWKGTPIHSLSAWK 489
                  5899*************************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.796195510IPR005202Transcription factor GRAS
PfamPF035144.7E-28221395IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MEMCHSDHFE FLWVSGKYDS AEVFQFEDHG KEEKRNCLIT NDDEREASKG IGSFYTGALG  60
LNQVHGSTAE KGIIFSKLHQ EQQLKELTGF ACFNDPYFDM ETPPFQSREE EITKLADDVA  120
FANSELNHAK KERPYAGSLQ ILKNYRSRFR KLNVEKMDLP SYQGCTLITS HKLSTDAILK  180
LAAQNFIQSS SKGTTVSFEL NHPYASSFGG LCVEDTKDVK LVQYLLASAE LVTKKQFERA  240
GKLLLRCDKL SSDQGNTIER LVYYFSGALH ERIDRTTGTV SPEGLGKMQS LDMLDMMSGL  300
TSAKIAMQKS VPFGQVSQIA GTQGVLDHVA DATKIHIVDL EIRTGMHYTI LMQALATRSQ  360
NPIEYLKAKI EETGRQLASF AQALKLKFSL NIIMNRMIVE SIYLSQAIRN IVATEGEERT  420
IRQVSVNVWK AFFAHFGMVQ VELSMSSMYQ ASLVLKNFEC GSSCTLNKDG KGLIIGWKGT  480
PIHSLSAWKF GCDSKNEDLD FDLLNLSSSS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027181835.10.0DELLA protein RGL2-like
TrEMBLA0A068V3910.0A0A068V391_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.16e-16RGA-like protein 3