PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g04470
Common NameGSCOC_T00015632001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 335aa    MW: 37371.5 Da    PI: 5.3626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g04470genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-18124173255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+W+AeIrdp++     r++lg+f tae Aa+a++  +++++g
  Cc08_g04470 124 HYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEAAARAYDTEARRIRG 173
                  7********.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.171124181IPR001471AP2/ERF domain
SMARTSM003802.0E-37124187IPR001471AP2/ERF domain
PfamPF008471.1E-10124172IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22124183IPR016177DNA-binding domain
CDDcd000181.46E-31124183No hitNo description
Gene3DG3DSA:3.30.730.102.4E-32124182IPR001471AP2/ERF domain
PRINTSPR003672.9E-11125136IPR001471AP2/ERF domain
PRINTSPR003672.9E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MCGGAIISDY IQPSRSSHRL SADLLWGIGG SGDLPDSKDI KKKKNTSNFY TKQLRSEIID  60
LDDEFEADFR EFSDQAVEEL EDVKPFGFSA SKHSAILSRG TKCGNSSDSS DESGKYLKRK  120
RKNHYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEAA ARAYDTEARR IRGKKAKLNF  180
PDDTQLSASR RTVVANPQKV RVKEDQSQVQ PRSSSFGCSD FGWEEQCPKT PEISSIFSSA  240
IDWEEPQFVE DANSSKNLKT SPLDLVPADG NNKKLSEEFS AFESQMKVAQ MPYLEGNWDA  300
SLDAFLNGPA VKDGGDEMDL WTFDDISAMM GGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22124181260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2787320.0KF278732.1 Coffea arabica ethylene response factor 3 mRNA, partial cds.
GenBankKF7435450.0KF743545.1 Coffea arabica ERF transcription factor 06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084800.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A068V5A00.0A0A068V5A0_COFCA; Uncharacterized protein
STRINGXP_009775920.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-57related to AP2 12