PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g04300
Common NameGSCOC_T00034249001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 278aa    MW: 30652.6 Da    PI: 9.2595
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g04300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1054.3e-333892155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 kprlrWt +LHerFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQkYRl
  Cc08_g04300 38 KPRLRWTADLHERFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQKYRL 92
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-323593IPR009057Homeodomain-like
PROSITE profilePS5129412.6563595IPR017930Myb domain
SuperFamilySSF466893.94E-163895IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-243893IPR006447Myb domain, plants
PfamPF002499.2E-94091IPR001005SANT/Myb domain
PfamPF143791.5E-23135182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MYGGVGGGGV GGSCYPFERN GGGGGGGLGG VVMTRDPKPR LRWTADLHER FVDAVTKLGG  60
PDKATPKSVL RVMGLKGLTL YHLKSHLQKY RLGQQAKKQI PAEQSKENSG DTFGQYNSHA  120
SGSISSRVNT EKREIQISEA LKCQIEVQKR LQEQLEVQKK LQMRIEAQGK YLQAILDKAQ  180
KSLSLDVNNP CNLEATKAQL SEFNLALSSF IENVNAEERN AEIMDKRMLS DMNRKMSEQN  240
YLGLNHEETH DVKLRLEGAS INFDLNTRSS YDFSGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-193891154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-193891154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-193891154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-193891154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084214.10.0myb family transcription factor PHL11-like
SwissprotC0SVS42e-81PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A068UVY10.0A0A068UVY1_COFCA; Uncharacterized protein
STRINGXP_004301640.11e-104(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44162139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.14e-70G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]