PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03370
Common NameGSCOC_T00010779001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 823aa    MW: 90454.1 Da    PI: 5.0197
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2090145156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Cc08_g03370  90 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 145
                  688899***********************************************998 PP
2START147.31.4e-462875112206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  la +  +el+k+ +a ep+W + s    e +n de+++ f+  +v         ++ea r  +vv+m++ +lv  +ld + +W e ++    +a+tl+
  Cc08_g03370 287 LAISSVEELMKMCQACEPLWLRTSdgskEVLNVDEYRRLFQW-GVdlkqnptqVRTEATRHNAVVIMNSITLVDAFLDAN-KWMELFPsivsRAKTLQ 382
                  6778899*****************99999999******9954.34688889999**************************.***************** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                  v++sg      g lqlm+aelq++splvp R++ f+Ry+ q  ++g+w+ivd  +d+ ++   + ++ +  ++pSg++i++++ng+s+vtwvehv+ +
  Cc08_g03370 383 VVTSGvsghasGSLQLMYAELQVPSPLVPtRESHFLRYCHQnAEGGTWAIVDFPLDNFNNSYPTIPYYK--RRPSGCIIQDMPNGYSRVTWVEHVEID 478
                  ****************************************************99998777655777777..9************************** PP

                  SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                  +    + +++lv+sg ++gak+w++ lqrqce+
  Cc08_g03370 479 STPLNQTINHLVSSGNVFGAKRWLSVLQRQCER 511
                  *999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-2269145IPR009057Homeodomain-like
SuperFamilySSF466892.52E-1975148IPR009057Homeodomain-like
PROSITE profilePS5007116.87687147IPR001356Homeobox domain
SMARTSM003891.7E-1888151IPR001356Homeobox domain
CDDcd000864.01E-1890148No hitNo description
PfamPF000461.1E-1790145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PROSITE profilePS5084840.947277514IPR002913START domain
SuperFamilySSF559612.61E-29278513No hitNo description
CDDcd088753.51E-110281510No hitNo description
SMARTSM002343.6E-28286511IPR002913START domain
PfamPF018525.6E-39287511IPR002913START domain
Gene3DG3DSA:3.30.530.208.9E-4328479IPR023393START-like domain
SuperFamilySSF559614.53E-16529777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MFGDCQILSS MGGNGVPSDS YYPSSIQNPS FSFMTNLPFN IFPPALIPKE ENGMSRSKEE  60
ILESGSGSEH VEGGVSGNEQ EAEQQQPTKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL  120
KLSQDLGLKP RQVKFWFQNR RTQMKAQQDR ADNVILRAEN ESLKNENYRL QAALRNVVCP  180
NCGGPAVLGE MGFDEQAVRL ENARLKEEYD RVCALLSQYG GRAIPEIGTS SLLAPSLDLD  240
INMLPRKFEE PIGDCPGMLS MPFIPENPNF SGGVLILDEE KSIAMELAIS SVEELMKMCQ  300
ACEPLWLRTS DGSKEVLNVD EYRRLFQWGV DLKQNPTQVR TEATRHNAVV IMNSITLVDA  360
FLDANKWMEL FPSIVSRAKT LQVVTSGVSG HASGSLQLMY AELQVPSPLV PTRESHFLRY  420
CHQNAEGGTW AIVDFPLDNF NNSYPTIPYY KRRPSGCIIQ DMPNGYSRVT WVEHVEIDST  480
PLNQTINHLV SSGNVFGAKR WLSVLQRQCE RIASLMARNI SDLGVIPSPE ARKNVMYLSQ  540
RMIRTFCMNI SNACGQSWTA LSDSAEDTVR IATRKVSGPG EPNGLILTAV STTWLPYPHY  600
QVFDLLRDER RRSQLDVLSN GNALQEVAHI ANGSHPGNCV SLLRINASPT VASNSSQKVE  660
LMLQESCTDD SGSLIVYTTV DVDSIQLAMN GEDPECIPLL PVGFVIHPLE IGSSSHDGSS  720
LDNDQTSENG NNLPADLSGC LLTVGLQVLA STIPTAKLNL SSVTAINQHI CNTVQQISAA  780
LGNHGSNIGT TSSNDNDNII IASLGEPSAP APPVQPDQVS TP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085532.10.0homeobox-leucine zipper protein HDG5-like isoform X3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A068VCG20.0A0A068VCG2_COFCA; Uncharacterized protein
STRINGXP_009786380.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7