PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g03350 | ||||||||
Common Name | GSCOC_T00010781001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Dof | ||||||||
Protein Properties | Length: 157aa MW: 18248.8 Da PI: 10.4464 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 34.5 | 4.2e-11 | 131 | 155 | 2 | 26 |
zf-Dof 2 kekalkcprCdstntkfCyynnysl 26 ke++l+cpr +stntkfCyynny+l Cc08_g03350 131 KEQTLNCPRHNSTNTKFCYYNNYNL 155 7899*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-9 | 123 | 156 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.7E-8 | 133 | 155 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MYFVVFFAFQ NLMRVFLKIL TNFNTTLHPL PTTTSSVQCF QEELKIEKGW EEKKKQENKE 60 GERKESGRSR KAKQGREKSG RKIKSNNEID GKINSIVPNF SRANRVYVST FFCTISCSKP 120 GSLERKVRPQ KEQTLNCPRH NSTNTKFCYY NNYNLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A068VD76 | 1e-111 | A0A068VD76_COFCA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-12 | Dof family protein |