PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g03340

Common Name

GSCOC_T00010783001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 376aa MW: 43994.9 Da PI: 10.7128

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g03340	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	87.4	1.3e-27	294	351	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++c++ s + kfCyynnysl qPr+fCk+CrryWtk l+n+P+G g+rk k+s Cc08_g03340 294 STTSCSKLGSPERKFCYYNNYSLLQPRHFCKTCRRYWTKDEFLKNIPIGRGSRKYKRS 351 5679**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-16	262	344	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	21.958	296	350	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-21	296	350	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MKKEVREQGR REKRKREKRE RQKSVRERQA EKEKETMVID GYGNCRQCYT VIESGGSKNK 60 NVHLRNRQFR TYPIFAKVFI FIHIFNVKFY WSERVENLIY FCSKLGSLQR KVRSQKEQVL 120 NCPRCNSTNT KSSSSSSSSK HDLAAISVNR FDCIVNRCDR KRSWNSKRDG KKKEVRGQGK 180 REERKKEKRE KRKEGRKKEI EKEKLMMAAD GRANCCQCLV IQTKFNSLNL QKIEGKINSI 240 IRYGNSYKIM SNFSLANHVY LPQKEQVLNC PRCNSTNTKF LVKPMEEMVV SNGSTTSCSK 300 LGSPERKFCY YNNYSLLQPR HFCKTCRRYW TKDEFLKNIP IGRGSRKYKR SLSSSSSSKV 360 PSPKKLLDLI PICLS*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MKKEVREQGR REKRKREKRE RQKSVRERQA EKEKETMVID GYGNCRQCYT VIESGGSKNK  60
NVHLRNRQFR TYPIFAKVFI FIHIFNVKFY WSERVENLIY FCSKLGSLQR KVRSQKEQVL  120
NCPRCNSTNT KSSSSSSSSK HDLAAISVNR FDCIVNRCDR KRSWNSKRDG KKKEVRGQGK  180
REERKKEKRE KRKEGRKKEI EKEKLMMAAD GRANCCQCLV IQTKFNSLNL QKIEGKINSI  240
IRYGNSYKIM SNFSLANHVY LPQKEQVLNC PRCNSTNTKF LVKPMEEMVV SNGSTTSCSK  300
LGSPERKFCY YNNYSLLQPR HFCKTCRRYW TKDEFLKNIP IGRGSRKYKR SLSSSSSSKV  360
PSPKKLLDLI PICLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	16	RREKRKRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A068VFS4	0.0	A0A068VFS4_COFCA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	2e-20	OBF-binding protein 3