PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g03320
Common NameGSCOC_T00010785001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Dof
Protein Properties Length: 269aa    MW: 31394.3 Da    PI: 10.2969
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g03320genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof833.1e-262887261
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 k++ l+c++ +stntkfCyyn  slsqPryfCk+CrryWt+  +lrn+ +G g+  + +s
  Cc08_g03320 28 KKQVLNCSKGNSTNTKFCYYNSCSLSQPRYFCKTCRRYWTERRSLRNISIGEGSSSSSTS 87
                 67899***********************************************99876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-172680IPR003851Zinc finger, Dof-type
PfamPF027013.7E-213083IPR003851Zinc finger, Dof-type
PROSITE profilePS5088420.5513286IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEVIVAPNGS NTSCSKPGSL EGKVSPQKKQ VLNCSKGNST NTKFCYYNSC SLSQPRYFCK  60
TCRRYWTERR SLRNISIGEG SSSSSTSSSV SSSKKLLDLI TIWKEWDFGK GWEEKRKREQ  120
REGEKERGER DVKKEKETMW ALCRKLKRGR IYFTFSPIFA KIFIFMQIFN AKFYWSERVE  180
ILNYPKIVMK PMEEIVVHNG SATSCSKLGS LEREVRSQKE QTLNCLRCNS TNTKWIFEKY  240
PSWRRFRKEQ KIIIIIFFFS GVIIKEVC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027079852.16e-34dof zinc finger protein DOF4.6-like isoform X1
RefseqXP_027079853.13e-34dof zinc finger protein DOF4.6-like isoform X2
TrEMBLA0A068VCG90.0A0A068VCG9_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.18e-23Dof family protein