PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g02950
Common NameGSCOC_T00037797001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 327aa    MW: 35898.9 Da    PI: 7.9298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g02950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.4e-14108159155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr l+P++   + ++ + a+i+  A+e++k+L+
  Cc08_g02950 108 QRMTHIAVERNRRKQMNEHLAVLRALMPES---YVQRGDQASIVGGAIEFVKELE 159
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.40E-12106163No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13106163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16106176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.945107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-11108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-10113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MALEALSSNE LLNFIIYDTI SATPFSSNDS NNSCHENSTN FLLDNGGLKT DNCGGAEAGG  60
GLENCSCMPP PPPPVQSQRQ QNSLAVQGRK KRRRRQRVCK NKEEAETQRM THIAVERNRR  120
KQMNEHLAVL RALMPESYVQ RGDQASIVGG AIEFVKELEH HLQSLEAQRF LLLQQHGGAN  180
DKTTTTMAAA IATATGNKCF PPAPTPFAQF FAYPQYTCSA QLPNKYTSKS KAAIADIEVT  240
LIETHANVRI LSRRRVRQLS KMVTGLQTLY LTILHLNITT LDPLVLYSIS AKVEEGCLLN  300
SADDIAGAVH HILRIIEEEA APCCQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795GRKKRRRRQ
28894RKKRRRR
38994KKRRRR
4108119RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027080303.10.0transcription factor bHLH71-like isoform X1
RefseqXP_027084006.10.0transcription factor bHLH71-like isoform X1
SwissprotQ9C7T44e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A068UXQ60.0A0A068UXQ6_COFCA; Uncharacterized protein
STRINGXP_009631535.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]