PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g02490
Common NameGSCOC_T00037725001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LSD
Protein Properties Length: 146aa    MW: 15119.7 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g02490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.32.6e-132852125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL YP GA+sV+Ca+C++V
  Cc08_g02490 28 CSGCRNLLVYPVGATSVCCAVCNAV 52
                 ************************9 PP
2zf-LSD146.55.9e-156791125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+t+
  Cc08_g02490 67 CGGCHTLLMYIRGATSVQCSCCHTI 91
                 ***********************97 PP
3zf-LSD141.91.7e-13105129125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C++V
  Cc08_g02490 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.102.6E-423126No hitNo description
TIGRFAMsTIGR010537.6E-132555IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-102852IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.77E-528126IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.1E-146493IPR005735Zinc finger, LSD1-type
PfamPF069439.8E-136791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.7E-12102131IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPFTPPAT GAQSQLVCSG CRNLLVYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT INLAMEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT SIGASASTIE QKFNS*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081922.11e-101protein LOL1 isoform X2
RefseqXP_027181084.11e-101protein LOL1 isoform X2
SwissprotQ93ZB12e-80LOL1_ARATH; Protein LOL1
TrEMBLA0A068UZC51e-99A0A068UZC5_COFCA; Uncharacterized protein
STRINGcassava4.1_018557m3e-93(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-67lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]