PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g19820

Common Name

GSCOC_T00033880001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 648aa MW: 73686.1 Da PI: 6.4016

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g19820	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.6	6e-19	486	533	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ Cc07_g19820 486 ITREVLEQNSTRKLEDAAKNIGVSRSTLKRICREYGIRRWPPRKERKV 533 899*****************************************7775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.355	469	553	IPR003035	RWP-RK domain
Pfam	PF02042	7.9E-16	486	533	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-15	563	646	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-15	565	646	No hit	No description
PROSITE profile	PS51745	15.06	567	647	IPR000270	PB1 domain
SMART	SM00666	6.5E-10	567	647	IPR000270	PB1 domain
Pfam	PF00564	1.4E-12	570	646	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
METIMWWRGL VQFWGLVRIG DKTYLTTCDQ PFALCSYFDP DVKPLCEYRK LCLEYLIPVD 60 DDDDDELIIG PPGRVFRSGF PEHAEDVGDY TSREYPQRDY AVDRVRFYWA LPIYHPTRHL 120 PIGVLEIVTP YVYFPRHWIL EKLQNLLRKV NLTTTCARLA EASSCQDGEI AKIHKALRNT 180 KSIFKRPKRG LYYPETWTTS GEILSSREGV DFIRKGQGVV GRAFSSKSAC FCRDIIQLSI 240 TEYPLAPIAR RFKYPCFAVC LQSSCSNNCI YVLEFFLPSN EKDSGDSRIL LNSIMEKLKK 300 HLGSSFKIAL GQELGQKLTV EVIKVSPEDE FDSFEICGTA GIESTPRLGE VQGGEGMMQV 360 DFFSSQQVDS ANAYINGVHG QQSGIVGCPP RPEHMQGFVD KSYLELNLAG VDVTHNSMNG 420 TYDQQNGIVR PSTGQVLMQN MVSIVDHEPI VEDPERDDAS TEQSGNEVTN LKMQEPSCTL 480 KSDLGITREV LEQNSTRKLE DAAKNIGVSR STLKRICREY GIRRWPPRKE RKVSQVFVKQ 540 KVVHPPTENI EEHHRLYATR LEDDSSMWVI KAKYQEDKIK FELPSSARKI DLEKSIAQRF 600 NISLGSFKIK YQDELNDWIL ITCDTDLSFC LKILHKLGGT TIEMLVS*

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

METIMWWRGL VQFWGLVRIG DKTYLTTCDQ PFALCSYFDP DVKPLCEYRK LCLEYLIPVD  60
DDDDDELIIG PPGRVFRSGF PEHAEDVGDY TSREYPQRDY AVDRVRFYWA LPIYHPTRHL  120
PIGVLEIVTP YVYFPRHWIL EKLQNLLRKV NLTTTCARLA EASSCQDGEI AKIHKALRNT  180
KSIFKRPKRG LYYPETWTTS GEILSSREGV DFIRKGQGVV GRAFSSKSAC FCRDIIQLSI  240
TEYPLAPIAR RFKYPCFAVC LQSSCSNNCI YVLEFFLPSN EKDSGDSRIL LNSIMEKLKK  300
HLGSSFKIAL GQELGQKLTV EVIKVSPEDE FDSFEICGTA GIESTPRLGE VQGGEGMMQV  360
DFFSSQQVDS ANAYINGVHG QQSGIVGCPP RPEHMQGFVD KSYLELNLAG VDVTHNSMNG  420
TYDQQNGIVR PSTGQVLMQN MVSIVDHEPI VEDPERDDAS TEQSGNEVTN LKMQEPSCTL  480
KSDLGITREV LEQNSTRKLE DAAKNIGVSR STLKRICREY GIRRWPPRKE RKVSQVFVKQ  540
KVVHPPTENI EEHHRLYATR LEDDSSMWVI KAKYQEDKIK FELPSSARKI DLEKSIAQRF  600
NISLGSFKIK YQDELNDWIL ITCDTDLSFC LKILHKLGGT TIEMLVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074250.1	0.0	protein NLP6-like
TrEMBL	A0A068USP0	0.0	A0A068USP0_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	7e-48	Nin-like family protein