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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g18360 | ||||||||
Common Name | GSCOC_T00018762001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 501aa MW: 54757.5 Da PI: 4.5353 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.8e-51 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtd elv++yLk+kv gkk++l e+i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g+r nr+t++gyWk+tgkd++v+ + Cc07_g18360 6 LPPGFRFHPTDVELVMYYLKRKVMGKKIPL-EAISELNIYKFSPWDLPdKsCLKSKDLEWYFFCPRERKYASGSRMNRSTETGYWKTTGKDRPVTY-N 101 79****************************.89**************96347788888**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vg+ ktLvf+kg ap+g++tdWv+heyr+ Cc07_g18360 102 KNSVGMVKTLVFHKGCAPRGQRTDWVIHEYRI 133 999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-59 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.822 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-26 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MVRTSLPPGF RFHPTDVELV MYYLKRKVMG KKIPLEAISE LNIYKFSPWD LPDKSCLKSK 60 DLEWYFFCPR ERKYASGSRM NRSTETGYWK TTGKDRPVTY NKNSVGMVKT LVFHKGCAPR 120 GQRTDWVIHE YRIEDRNLAD MGDAQDAYVL CKLFHKSGPG PKNGASYGAP FREEDWDDDE 180 EIPVDSLLPG GPSTVEPVQP ENDNSSAAIS LVDLGNAPLM RPNEPGPSFV QPSKDTVLSN 240 GQNSSMVTRV VDAGSASGWS LSEAGLTSAS HSGNGMDMDP PDDDILHLLA AFSEDSPLLP 300 TVNGNIELGD LGQGRAAEAI PHSDGGDLFG GLEDLSNLAE LNGGGLNLFD NYQIGYTTNN 360 MRLQEDSGFL ELNDLDAPLN FTAQSCGPEQ MHTGGLYRPS NSSGSEHVFA GSLCTEYNTS 420 NQTWNGDNIP GYAQHPTDLH HLLVVPDASD IQGNSTSIFP MGNVYDSTNA AYNLDFTTNR 480 PLEDIRNAAG NQERGRSHNF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 5 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074606.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A068U8B8 | 0.0 | A0A068U8B8_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6050 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 3e-89 | NAC domain containing protein 103 |