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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc07_g15620 |
Common Name | GSCOC_T00036454001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
M-type_MADS |
Protein Properties |
Length: 218aa MW: 25679.1 Da PI: 6.8758 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc07_g15620 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 76.8 | 1.6e-24 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
ri n++nrqvtfskRrngilKKA+EL vLCd+++a+ ++s++g++ +s
Cc07_g15620 10 RIVNNTNRQVTFSKRRNGILKKAYELAVLCDIDIALFMVSPSGRISYFS 58
899****************************************998776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MGRVKLPISR IVNNTNRQVT FSKRRNGILK KAYELAVLCD IDIALFMVSP SGRISYFSGT 60 KRIEDVMLQY FNLKDEERES DHDSEGIVHD KEVRQILICN DTYKFGRERT RSSNSNEYKQ 120 EIMNLQHQLE IAKEQLRQSS EERLSEALNL VEKRKRHLLT DHSSSYQETV EVSPQLFVVW 180 LVVVFFVYDS ACFWIPYRDI DDHFFLWIQS TSFNQCH*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-16 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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