PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g14600
Common NameGSCOC_T00036596001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 361aa    MW: 39608.3 Da    PI: 4.4743
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g14600genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-1958111356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Cc07_g14600  58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                  566899***********************************************9 PP
2HD-ZIP_I/II130.95.1e-4257149193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ e+L++++e+L +e++e
  Cc07_g14600  57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDTLKHNYENLQHDNEALIKEIRE 149
                  69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.91E-1944115IPR009057Homeodomain-like
PROSITE profilePS5007117.36253113IPR001356Homeobox domain
SMARTSM003894.4E-1856117IPR001356Homeobox domain
PfamPF000463.1E-1658111IPR001356Homeobox domain
CDDcd000869.66E-1858114No hitNo description
Gene3DG3DSA:1.10.10.607.9E-2060120IPR009057Homeodomain-like
PRINTSPR000311.1E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.1E-593109IPR000047Helix-turn-helix motif
PfamPF021833.6E-18113155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MKRLGSSDSL GALMSICPTS TDEHNQGNSH VYPREFQSML EGLDEEGCVE ESGHVPEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
VLKANYDTLK HNYENLQHDN EALIKEIREL KSKLQDDKSE GKVLVKEEVM VSESDDDKAI  180
DHQAKTSTDD VLAECDEDDD ANELNFVESF NSSNGVMNGA SIFTDFKDGS CDSDSSAILN  240
EENLNNSSSS PNAAISSSGG GVVLQTVPHQ FLISNGGGGG GVGGSSSTTI SNGFQFGHDS  300
KAAILGEAHK SSSAAAAAAY QPQFVKIEEH NFFSGDDSCS TFFSDDQPPT LHWYCPEEWN  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074840.10.0homeobox-leucine zipper protein ATHB-6
TrEMBLA0A068U0030.0A0A068U003_COFCA; Uncharacterized protein
STRINGVIT_07s0191g00180.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-67homeobox protein 6