![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc07_g14350 | ||||||||
Common Name | GSCOC_T00036625001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 253aa MW: 27707 Da PI: 7.6645 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.8 | 2e-31 | 50 | 103 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k rY+eClkNhA+ +GghavDGCgEf+++ g+egt +alkCaAC+CHRnFHR+e Cc07_g14350 50 KPRYRECLKNHAVGIGGHAVDGCGEFLAA-GAEGTLDALKCAACNCHRNFHRKEA 103 779*************************9.999********************96 PP | |||||||
2 | Homeobox | 16.3 | 1.7e-05 | 190 | 245 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+f++eq e + +l e k ++ ++e ++L ++lg++ ++ kvW +N + Cc07_g14350 190 KRFRTKFSQEQKEKMSDLAEklgwKIQKQDEEVVQQLCNELGIKRQVLKVWMHNNK 245 789************99999776678999*************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-23 | 34 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.7E-29 | 52 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.3E-28 | 52 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.926 | 53 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.84E-20 | 176 | 250 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-31 | 184 | 251 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.794 | 187 | 251 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.3E-26 | 189 | 245 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MEFEDQEENE GVEMELGPSY DSLGNSNSTR VSNKVPSPVE MSAEPTSQRK PRYRECLKNH 60 AVGIGGHAVD GCGEFLAAGA EGTLDALKCA ACNCHRNFHR KEALPGLPPH DPFHLYHHHY 120 HQQPPPPPPQ LLTYRTPSGY LHVSPPQQNR PLALPSISGG GEHEDMSNMN TSGGGGSGGG 180 GGGFVGSSKK RFRTKFSQEQ KEKMSDLAEK LGWKIQKQDE EVVQQLCNEL GIKRQVLKVW 240 MHNNKHTLGK KP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-22 | 189 | 247 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074400.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 3e-66 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A068U031 | 0.0 | A0A068U031_COFCA; Uncharacterized protein | ||||
STRING | Gorai.003G042700.1 | 6e-93 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-60 | homeobox protein 22 |