PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g14210
Common NameGSCOC_T00036644001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 232aa    MW: 25665.6 Da    PI: 9.0383
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g14210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-135298354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++h+e+ErrRR+riN  +++Lr llPk       K +Ka+ L ++v++I++L
  Cc07_g14210 52 KSHSEAERRRRKRINGHLATLRNLLPKT-----IKADKASLLAEVVRCIREL 98
                 79*************************8.....69***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6724998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-105298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1352109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-952103No hitNo description
SuperFamilySSF474593.79E-1353115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-1155104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.6E-4143204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MHTLPSFYEV GSCSESYNFL HEILNSREQL HLDNSTVNAI SMAEAKAVAA NKSHSEAERR  60
RRKRINGHLA TLRNLLPKTI KADKASLLAE VVRCIRELKK STEELSATEG DDQSNTAMKL  120
MFPSETDELK LCYDDGDSRT IKATLCCEDR PEMMIELKRA LNAVKAKVVK AEMATVGGRT  180
KTVLWLQASA AGEEGLATIR RALKVVVDRS IMLPTPGQAL PGNKRPRLYH C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074383.11e-171transcription factor bHLH30-like
TrEMBLA0A068U1R81e-170A0A068U1R8_COFCA; Uncharacterized protein
STRINGXP_009605433.11e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.18e-34bHLH family protein