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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g12840 | ||||||||
Common Name | GSCOC_T00036825001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 692aa MW: 77978.9 Da PI: 6.0786 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 26 | 81 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++++eq+++Lee+F+ +++p++++r++L+++lgL+ rq+k+WFqN+R++ k Cc07_g12840 26 RKQYHRHSAEQIQRLEEFFKDCPHPDENQRRQLSRELGLEPRQIKFWFQNKRTQTK 81 788999**********************************************9988 PP | |||||||
2 | START | 122.3 | 6.4e-39 | 209 | 428 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 a a++el+ + +ep+Wvks+ e++d+ + k++ + +e +r+sg+v+ ++ + ++++d+e+W ++ k+ t+ev+ Cc07_g12840 209 AVNAMDELLELFRGNEPLWVKSPtneryliHRETYDKLYPKISH--InsssSWIESSRDSGLVPITAR-HLIDIFQDPEKWMDFFPtivtKVRTIEVL 303 6789*******************777666666666666666644..1568899*************99.8889999999***99999999******** PP CTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.H CS START 86 ssg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.h 178 ++g g l +m +l +lsplv+ R+ f+Ry rql +wviv vS ds ++ + ++s+ ++pSg+li++++ng+ +v wvehv +++r+ h Cc07_g12840 304 DTGkrgGSLFVMHEKLHVLSPLVApRELAFLRYVRQLDSTTWVIVNVSYDSLKELE-DASSSQTWMFPSGCLIQDMPNGKANVAWVEHVQVDDRSLtH 400 ***********************99******************************9.9************************************999* PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 l++ +v ++a gak+w tlqr ce+ Cc07_g12840 401 PLYKDMVCDSQAYGAKRWIVTLQRMCER 428 **************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-21 | 11 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.92E-18 | 13 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.459 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-17 | 25 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.8E-17 | 26 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.79E-17 | 26 | 84 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.226 | 198 | 431 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.1E-29 | 199 | 429 | No hit | No description |
CDD | cd08875 | 3.39E-87 | 202 | 427 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.0E-8 | 207 | 394 | IPR023393 | START-like domain |
SMART | SM00234 | 8.8E-20 | 207 | 428 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-31 | 209 | 428 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.03E-5 | 450 | 622 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MDFAPEGSGS ADEHDDSSNS RRERERKQYH RHSAEQIQRL EEFFKDCPHP DENQRRQLSR 60 ELGLEPRQIK FWFQNKRTQT KSHNERADND ALRVENDRFY YENLVMREAL RNLVCPKCED 120 ASSGEEARQR NLERLRAENA WLKQELERAS RVVSTFSRRS GVLESYLPPS FSPLSYLGEN 180 IPGTSTTTLL PQGLSEIQEM EKSVMVETAV NAMDELLELF RGNEPLWVKS PTNERYLIHR 240 ETYDKLYPKI SHINSSSSWI ESSRDSGLVP ITARHLIDIF QDPEKWMDFF PTIVTKVRTI 300 EVLDTGKRGG SLFVMHEKLH VLSPLVAPRE LAFLRYVRQL DSTTWVIVNV SYDSLKELED 360 ASSSQTWMFP SGCLIQDMPN GKANVAWVEH VQVDDRSLTH PLYKDMVCDS QAYGAKRWIV 420 TLQRMCERFA FSLGPIPTPG HELEGVIDAP EGRKSLAKLS HKMVKNFCHI LSMPERIDLP 480 QLSELNRNGF RVSVHRSDTS GQPNNMIVCV AASLRLPTSF ENLFDFFKDE HARDQWDVLS 540 EGNPVHEIAH ISTGTHPGNS ISLMQPVNPK ENMLILQESS IDLLGANLIY APVPVSTITS 600 AISGQDTTDT NVLPSGFIIS SDGVDGGTRA GASSSSSMIG SNSSLLTVAF QIMVRPDTFS 660 DRLITDSVAT IHALISSTVQ KIRLAVGSRF G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 27 | RRERERKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075663.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
TrEMBL | A0A068TZK7 | 0.0 | A0A068TZK7_COFCA; Uncharacterized protein | ||||
STRING | Migut.H02245.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1021 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |