PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g12760

Common Name

GSCOC_T00036835001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 664aa MW: 75493.9 Da PI: 5.6293

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g12760	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.2	2.6e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePw+Lp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s + Cc07_g12760 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWELPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-Q 101 79**************************.99***********6434555777**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLv+y+grap+g +tdWvmheyrl Cc07_g12760 102 ARAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.997	6	156	IPR003441	NAC domain
Pfam	PF02365	5.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWE LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QARAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECET NSGLQDAYAL CRVFKKSLNI PKIGDHYGTA TASDRSSSID 180 PYSEGRCDDL ESFDYSMPSA TTINNSNYPM QSASCSSNII HGSPLNNINE GPSDCRWMQY 240 LSDEAFGFSN PSFPNHAAMS YPPSRVDIAL ECARLQHRFP LSPLEVQDFP QVGFADARMP 300 QLGYIHENPN QQDIVEEILS VAQASQDFMN EDAWGGNYAP ADDFSFLPPT NQIHDSSSFK 360 FMDKLREDCS FRSIDIGGMD EGLKSERMVE NLRWVGMSDK DLEKSFLEEF KTVPIESIST 420 FQREENQVPG ETIHQNDQNE AEKTDYSLGF NNDKGSDNFL TDGDVEDFSS TSNFEVYEKI 480 EVSHGMLIST RQTANTFYHQ LMPSKTVRVH LHPMIMHDFP VAKSDSRTVP KTGHFPAKFL 540 TFSSAISKSL RPWRKTVRTF ISMIAILYAY WIFYGEYLED KEPMDDPVML SNKASELIEG 600 DCASKTMNKT IKVQDYELNC EKSRASMVGK GGSISAVHNK IWTYLTLTLA LCTFWMHQIV 660 PSP*

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWE LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QARAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECET NSGLQDAYAL CRVFKKSLNI PKIGDHYGTA TASDRSSSID  180
PYSEGRCDDL ESFDYSMPSA TTINNSNYPM QSASCSSNII HGSPLNNINE GPSDCRWMQY  240
LSDEAFGFSN PSFPNHAAMS YPPSRVDIAL ECARLQHRFP LSPLEVQDFP QVGFADARMP  300
QLGYIHENPN QQDIVEEILS VAQASQDFMN EDAWGGNYAP ADDFSFLPPT NQIHDSSSFK  360
FMDKLREDCS FRSIDIGGMD EGLKSERMVE NLRWVGMSDK DLEKSFLEEF KTVPIESIST  420
FQREENQVPG ETIHQNDQNE AEKTDYSLGF NNDKGSDNFL TDGDVEDFSS TSNFEVYEKI  480
EVSHGMLIST RQTANTFYHQ LMPSKTVRVH LHPMIMHDFP VAKSDSRTVP KTGHFPAKFL  540
TFSSAISKSL RPWRKTVRTF ISMIAILYAY WIFYGEYLED KEPMDDPVML SNKASELIEG  600
DCASKTMNKT IKVQDYELNC EKSRASMVGK GGSISAVHNK IWTYLTLTLA LCTFWMHQIV  660
PSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-56	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-56	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-56	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-56	1	156	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	7e-56	1	156	15	168	NAC domain-containing protein 19
3swm_B	7e-56	1	156	15	168	NAC domain-containing protein 19
3swm_C	7e-56	1	156	15	168	NAC domain-containing protein 19
3swm_D	7e-56	1	156	15	168	NAC domain-containing protein 19
3swp_A	7e-56	1	156	15	168	NAC domain-containing protein 19
3swp_B	7e-56	1	156	15	168	NAC domain-containing protein 19
3swp_C	7e-56	1	156	15	168	NAC domain-containing protein 19
3swp_D	7e-56	1	156	15	168	NAC domain-containing protein 19
4dul_A	7e-56	1	156	12	165	NAC domain-containing protein 19
4dul_B	7e-56	1	156	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074037.1	0.0	NAC domain-containing protein 86-like
Refseq	XP_027074038.1	0.0	NAC domain-containing protein 86-like
TrEMBL	A0A068U296	0.0	A0A068U296_COFCA; Uncharacterized protein
STRING	XP_009790763.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-157	NAC domain containing protein 28