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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g12760 | ||||||||
Common Name | GSCOC_T00036835001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 664aa MW: 75493.9 Da PI: 5.6293 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.2 | 2.6e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePw+Lp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s + Cc07_g12760 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWELPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-Q 101 79****************************.99***************6434555777**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLv+y+grap+g +tdWvmheyrl Cc07_g12760 102 ARAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-64 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.997 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWE LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QARAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECET NSGLQDAYAL CRVFKKSLNI PKIGDHYGTA TASDRSSSID 180 PYSEGRCDDL ESFDYSMPSA TTINNSNYPM QSASCSSNII HGSPLNNINE GPSDCRWMQY 240 LSDEAFGFSN PSFPNHAAMS YPPSRVDIAL ECARLQHRFP LSPLEVQDFP QVGFADARMP 300 QLGYIHENPN QQDIVEEILS VAQASQDFMN EDAWGGNYAP ADDFSFLPPT NQIHDSSSFK 360 FMDKLREDCS FRSIDIGGMD EGLKSERMVE NLRWVGMSDK DLEKSFLEEF KTVPIESIST 420 FQREENQVPG ETIHQNDQNE AEKTDYSLGF NNDKGSDNFL TDGDVEDFSS TSNFEVYEKI 480 EVSHGMLIST RQTANTFYHQ LMPSKTVRVH LHPMIMHDFP VAKSDSRTVP KTGHFPAKFL 540 TFSSAISKSL RPWRKTVRTF ISMIAILYAY WIFYGEYLED KEPMDDPVML SNKASELIEG 600 DCASKTMNKT IKVQDYELNC EKSRASMVGK GGSISAVHNK IWTYLTLTLA LCTFWMHQIV 660 PSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-56 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-56 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-56 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-56 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-56 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-56 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-56 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-56 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-56 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-56 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-56 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-56 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-56 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-56 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074037.1 | 0.0 | NAC domain-containing protein 86-like | ||||
Refseq | XP_027074038.1 | 0.0 | NAC domain-containing protein 86-like | ||||
TrEMBL | A0A068U296 | 0.0 | A0A068U296_COFCA; Uncharacterized protein | ||||
STRING | XP_009790763.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1495 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-157 | NAC domain containing protein 28 |