PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g12410
Common NameGSCOC_T00036877001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARF
Protein Properties Length: 846aa    MW: 93889.7 Da    PI: 6.602
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g12410genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.8e-20127236199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..........EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy........rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++  +W++++i+         ++++r++lt+GW+ Fv+a++L +gD+v+F 
  Cc07_g12410 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQTPPA--QELIARDLHDVEWKFRHIFrgkfgfllFGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 222
                  99*****************************7655544..48***************9988888888888999************************* PP

                  E-SSSEE..EEEEE-S CS
           B3  84 ldgrsefelvvkvfrk 99 
                    ++++ +l+++++r+
  Cc07_g12410 223 --WNEKNQLLLGIRRA 236
                  ..8899999****997 PP
2Auxin_resp118.84.3e-39261344183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  Cc07_g12410 261 AAHAAATNSCFTIFYNPRASPSEFVIPLSKYFKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 344
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.09E-47111264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-39120250IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-19126235No hitNo description
SMARTSM010192.4E-17127237IPR003340B3 DNA binding domain
PfamPF023628.2E-18127236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716127237IPR003340B3 DNA binding domain
PfamPF065072.4E-34261344IPR010525Auxin response factor
PfamPF023092.8E-6715807IPR033389AUX/IAA domain
PROSITE profilePS5174523.055719803IPR000270PB1 domain
SuperFamilySSF542777.19E-6732793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MKLSTSGLGQ QAHEGEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPS LPAQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGTPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ TPPAQELIAR DLHDVEWKFR  180
HIFRGKFGFL LFGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ  240
TVMPSSVLSS DSMHIGLLAA AAHAAATNSC FTIFYNPRAS PSEFVIPLSK YFKAVYHTRV  300
SVGMRFRMLF ETEESSVRRY MGTITGIGDL DPVRWPNSHW RSVKVGWDES TAGERQPRVS  360
LWEIEPLTTF PMYPSLFPLR LKRPWYPGAS SFQDAGNEAV NGMTWLRGET GEQGLHSLNF  420
PSVGMLPWMQ QRIDPSMLRN DLNQQYQAML ALQNFGSGDL LKQQMVQFQP PVQYLQHTGS  480
HNTLLQHQQV IQQGVSPHIL PPQTQMLSEN LNRAQAQQVN NQSEEQQPHH PFPEAYVIQH  540
EQLQQRQSSN IPSPSFSKTD FADSNTKFSA SIAPSSMQNV LGSLCSEGST SLLNFSRTTQ  600
TMLNEQPPQQ SWVSKYSHGQ VNTCSSAASL PPYPGKDGPS GQEACGLDAQ NQALFGANID  660
SAALLLPTTV SSVGTSSIDA GVSSMPLGDS GFQNPLYGFV HDSSELLHGT GQDSPTRART  720
FVKVHKLGCV GRSLDISRFN SYHELRQELG QMYGIEGLLE DPQRSGWQLV FVDRENDVLL  780
LGDDPWEAFV NNVWYIKILS PEEVQKLGKQ EGESLSRIAA ERMNSSSGDG RDMVARFPSL  840
GSLEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1551636547388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075605.10.0auxin response factor 8-like
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A068U2C00.0A0A068U2C0_COFCA; Auxin response factor
STRINGXP_009612885.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38572339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  3. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  4. Wang Y, et al.
    MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development.
    Plant Physiol., 2015. 168(3): p. 984-99
    [PMID:25941314]
  5. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  6. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  7. Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V
    Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8.
    Plant Physiol., 2016. 172(3): p. 1853-1861
    [PMID:27688620]
  8. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  9. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  10. Zheng K, et al.
    Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1813
    [PMID:29114256]
  11. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  12. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]