PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g10760

Common Name

GSCOC_T00037077001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 266aa MW: 29055.7 Da PI: 8.8566

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g10760	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00028	35	69	10	46
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLek 46 + RR+++N+ f+eL +l + + K++ a+i+ Cc07_g10760 35 KLRRNELNEHFQELGNILDTdS---VRLKNDEATIVIS 69 78****************9944...6666766666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.4E-6	26	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-6	35	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MVDCQSDISD SRQEDDLDSN GAVVAKTRHQ AHGKKLRRNE LNEHFQELGN ILDTDSVRLK 60 NDEATIVISP IQALKDLASE VSRLQSEQAA IRQDIKKLAK ENKELREKTS LQFDVGAFEV 120 QRQQRHRSMF PRSAIDPSAV MACAFSYPVA QSVSSGPYPR HTPSLHPKPF LANQSAVPSD 180 PGVMMILRSA AATPHINKPS SRNASTPCIF GKEIARNGSS GQDRSGNGEK SGDIPDMVTD 240 LELAIPGSTA QKPLPRDKGK RPLRD*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027179335.1	0.0	transcription factor bHLH121-like isoform X1
TrEMBL	A0A068U2R0	0.0	A0A068U2R0_COFCA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-30	bHLH family protein