PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g10350
Common NameGSCOC_T00037127001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 382aa    MW: 41330.9 Da    PI: 6.7556
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g10350genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.87e-19302336135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  Cc07_g10350 302 CSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 336
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.714296332IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-16296350IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-14297359No hitNo description
Gene3DG3DSA:3.30.50.109.7E-15300334IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.58E-14301349No hitNo description
PfamPF003208.9E-17302336IPR000679Zinc finger, GATA-type
PROSITE patternPS003440302327IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLYRTHHHPF LFPLNPSFTS SSLSSSASSS PHPFPLPLPL PLPPTAAPPL SSSPTSSPQV  60
VVAQEEGMEG ALKSSFRPDV APLKTNPHPH HLHQHQHQQP AFSDDMLAVN NNGQNMESDF  120
FVDDLLDFSN APAEDPEEHK PHEKLDENES ATTSIITKSN VTLSPKDDFG SLPDSALDVP  180
ADDLESLEWL SHFVEDSFSE YSLTCPVSKF PPAPAKARSE PEAPVEAKPS FTTPVQTKAR  240
TKRARTGGRV WSLVGSPSLT ESSSSSTSSS STTTSSSSPQ ACNPWLAYSS PSHGGGQQPR  300
RCSHCGVQKT PQWRAGPLGA KTLCNACGVR YKSGRLLPEY RPACSPTFSS ELHSNNHRKV  360
LEMRRKKEVE TGLTPPPVQS F*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027178559.10.0GATA transcription factor 5
SwissprotQ9FH575e-68GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A068U1850.0A0A068U185_COFCA; GATA transcription factor
STRINGXP_009761911.16e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-64GATA transcription factor 5