PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

SRS

Protein Properties

Length: 386aa MW: 41407.9 Da PI: 7.6641

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g10250	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210.9	3.1e-65	132	301	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel....................ks 80 g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++++++a++++++++ ++ Cc07_g10250 132 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQQLASLQQQQQQQQEQAQENQNQQQqqlqlhhghshrgenskrqrEN 229 5789**************************************************999988887444443333331233333333333333222233 PP DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++s+l +t+l+s++ + +e+ ++P+evs++avfrcvrvss+d++e+++aYqtav++gGhvfkGiLydqGle+ Cc07_g10250 230 RASSSLVCTRLPSNS--SGFEVGHFPAEVSTSAVFRCVRVSSIDENEDQFAYQTAVNVGGHVFKGILYDQGLES 301 444444445544443..2355555*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.8E-66	134	300	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.9E-27	136	178	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.7E-27	251	299	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010252	Biological Process	auxin homeostasis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048479	Biological Process	style development
GO:0048480	Biological Process	stigma development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MAGFFSLGGG GSSRGGSSSN QESSSHNNTT TNNQQHQPTE INPENWFLYR SDEYKGFEIW 60 HPQPQHQYHQ PHNQPEHHHF RHHNPALQDF YPSAGGGLDF GPSSSHRGGG GGLNISSDEP 120 SRSAFVMMRS SGGGISCQDC GNQAKKDCAH MRCRTCCKSR GFQCSTHVKS TWVPAAKRRE 180 RQQQLASLQQ QQQQQQEQAQ ENQNQQQQQL QLHHGHSHRG ENSKRQRENR ASSSLVCTRL 240 PSNSSGFEVG HFPAEVSTSA VFRCVRVSSI DENEDQFAYQ TAVNVGGHVF KGILYDQGLE 300 SQYMTTESSS GGGSGSTTGV QQLNLITGTA ATATSTGTTT VSGGGGGGGG GGGGAAGSPF 360 LDPSMYPAPL NSYMAGTQFF PPPRS*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MAGFFSLGGG GSSRGGSSSN QESSSHNNTT TNNQQHQPTE INPENWFLYR SDEYKGFEIW  60
HPQPQHQYHQ PHNQPEHHHF RHHNPALQDF YPSAGGGLDF GPSSSHRGGG GGLNISSDEP  120
SRSAFVMMRS SGGGISCQDC GNQAKKDCAH MRCRTCCKSR GFQCSTHVKS TWVPAAKRRE  180
RQQQLASLQQ QQQQQQEQAQ ENQNQQQQQL QLHHGHSHRG ENSKRQRENR ASSSLVCTRL  240
PSNSSGFEVG HFPAEVSTSA VFRCVRVSSI DENEDQFAYQ TAVNVGGHVF KGILYDQGLE  300
SQYMTTESSS GGGSGSTTGV QQLNLITGTA ATATSTGTTT VSGGGGGGGG GGGGAAGSPF  360
LDPSMYPAPL NSYMAGTQFF PPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00613	PBM	Transfer from AT3G51060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073964.1	0.0	protein SHI RELATED SEQUENCE 1
Swissprot	K4B6C9	4e-99	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A068U196	0.0	A0A068U196_COFCA; Uncharacterized protein
STRING	EOX90942	1e-116	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-69	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]