PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g09990
Common NameGSCOC_T00037173001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 386aa    MW: 42833.9 Da    PI: 8.3674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g09990genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.4e-053063451155
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   R +++ ++++ L +l+ +      +K + a++L++A+ YI+ Lq
  Cc07_g09990 306 VRKEKLGDRIAALHRLVSPF-----GKTDTASVLTEAIGYIQFLQ 345
                  57788889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.017295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0092301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-11305357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-8305356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-6305349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MESANFNQHH DQPLQQQEHQ HQQQQQLIYP AFSSSTSSSA TLVSTVNGQW NPSMVLEGDD  60
FSRYMNEILP NSRDYFWPKS INSVPSVKKS LLEVDHEDSN CRDFRSYLHH PLPSKGGINP  120
GLFLKSDDMN GSILKNSYIK NGQQDVSIDL NENLWIGSFS HSHINQKLST NESYSNGDGF  180
ASFVGLPPSP PNFMSSGTSE STDQHQLYAS TCLLPTSQSL PLATEILNCG NFDEGRRTHE  240
SFEERMSSDY CHLRQSSDSP SNSSNKTSTF RKEVSRPKTQ KPTPSLAVAK KPRVLAPQSS  300
CAALKVRKEK LGDRIAALHR LVSPFGKTDT ASVLTEAIGY IQFLQDQIQT LSMAYLKSSR  360
SSKSCRATRG VSLRLPVSII IKILT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075269.10.0transcription factor bHLH110-like isoform X1
RefseqXP_027075273.10.0transcription factor bHLH110-like isoform X4
TrEMBLA0A068U0A70.0A0A068U0A7_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134431213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-27bHLH family protein