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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g09640 | ||||||||
Common Name | GSCOC_T00037216001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 9213.28 Da PI: 10.1021 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 11 | 54 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E +l+ +a +++ ++ +W +ar +g +t++++k ++q Cc07_g09640 11 SWTAKENKLFEKALAKYDKDtadRWQNVARAVG--KTEEEVKRHYQ 54 7*******************************8..9*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.796 | 7 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-8 | 8 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-14 | 10 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-6 | 11 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-8 | 11 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.04E-5 | 12 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MASNSLSSSS SWTAKENKLF EKALAKYDKD TADRWQNVAR AVGKTEEEVK RHYQILVEDL 60 KHIESGNVPF PNYRSGRNKR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-32 | 1 | 75 | 1 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074356.1 | 1e-53 | protein RADIALIS-like 3 | ||||
Refseq | XP_027179780.1 | 1e-53 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-32 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A068U0E4 | 3e-52 | A0A068U0E4_COFCA; Uncharacterized protein | ||||
STRING | EOX98008 | 4e-36 | (Theobroma cacao) | ||||
STRING | XP_010029788.1 | 2e-36 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-31 | RAD-like 1 |