PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 503aa MW: 51869.1 Da PI: 8.2148

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g09220	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cc07_g09220 57 FVCEICNKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	11.2	0.0011	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Cc07_g09220 133 WKCDKCSKKYAVQSDWKAHSKIC 155 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.94E-7	56	79	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	56	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	57	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	57	79	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.0E-5	57	79	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	98	128	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.4E-4	121	154	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.94E-7	128	153	No hit	No description
SMART	SM00355	150	133	153	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MNDSTASGDA SASSSGNQAA APPTSSAKKK RNLPGMPDPD AEVIALSPKT LLATNRFVCE 60 ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC PELTCVHHDP SRALGDLTGI 120 KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR RDSFITHRAF 180 CDALAEESAK AQTVEALPAP TADDEEPKLQ TLASSSPPPS VAAQPPPPAA LVSSALPVQN 240 PEGPENPKQS PAPPQILEET SVVTSLTGSC GSSSSSSSHG STSSSVFASL FASSTTSGSL 300 QSQTPEFTDL FRAVARPENA SEVVASSSTE PISLCLATSH GSSIFGTAGQ ERRQYAPAPQ 360 PAMSATALLQ KAAQIGAAAT NASLLRGFGI VSSASASSGQ QEWSGRGIES DSASLAAGLG 420 LGLPCDGGSS LKELMLGTPS VFGPKHTTLD LLGLGMAAGG GPSGGFSALM TSIGGGLDVA 480 AAAAATFGGS GEYSGKDMGR GS*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MNDSTASGDA SASSSGNQAA APPTSSAKKK RNLPGMPDPD AEVIALSPKT LLATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC PELTCVHHDP SRALGDLTGI  120
KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR RDSFITHRAF  180
CDALAEESAK AQTVEALPAP TADDEEPKLQ TLASSSPPPS VAAQPPPPAA LVSSALPVQN  240
PEGPENPKQS PAPPQILEET SVVTSLTGSC GSSSSSSSHG STSSSVFASL FASSTTSGSL  300
QSQTPEFTDL FRAVARPENA SEVVASSSTE PISLCLATSH GSSIFGTAGQ ERRQYAPAPQ  360
PAMSATALLQ KAAQIGAAAT NASLLRGFGI VSSASASSGQ QEWSGRGIES DSASLAAGLG  420
LGLPCDGGSS LKELMLGTPS VFGPKHTTLD LLGLGMAAGG GPSGGFSALM TSIGGGLDVA  480
AAAAATFGGS GEYSGKDMGR GS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-35	129	194	3	68	Zinc finger protein JACKDAW
5b3h_F	5e-35	129	194	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM635075	0.0	HM635075.1 Coffea canephora BAC 111O18 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074557.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	0.0	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A068U3D8	0.0	A0A068U3D8_COFCA; Uncharacterized protein
STRING	VIT_04s0023g01430.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]