PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 212aa MW: 24402.4 Da PI: 6.814

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g09150	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.7e-19	56	108	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k Cc07_g09150 56 KRKLSQEQVNLLEINFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 108 4589************************************************9 PP
2	HD-ZIP_I/II	118.8	2.9e-38	55	146	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + e++rLe+ev +L+e+++e Cc07_g09150 55 RKRKLSQEQVNLLEINFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHENTVVEKCRLETEVLKLKEQVSE 146 8***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.536	50	110	IPR001356	Homeobox domain
SMART	SM00389	3.8E-17	53	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.25E-17	54	119	IPR009057	Homeodomain-like
CDD	cd00086	8.14E-15	55	111	No hit	No description
Pfam	PF00046	2.9E-16	56	108	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	57	117	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	81	90	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	90	106	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTSSMSHQAD QQMVLISQYY PGIYSQLAPA EQGEVKSRRR RKKNRGGESS SSGVRKRKLS 60 QEQVNLLEIN FGSEHKLESE RKDRLASELG LDPRQVAVWF QNRRARWKSK KLEEEYSKLK 120 SEHENTVVEK CRLETEVLKL KEQVSEAEKE IQRLLERSDG VSSNSPSSSF SMEAIEPPFL 180 GEFGMEGFEN VFYVPETNYV NGLEWVNIYN M*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	56	RRRKKNRGGESSSSGVRKR
2	40	57	RKKNRGGESSSSGVRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073124.1	1e-152	homeobox-leucine zipper protein ATHB-40
Refseq	XP_027180055.1	1e-152	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	1e-76	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A068U2N9	1e-152	A0A068U2N9_COFCA; Uncharacterized protein
STRING	Solyc02g085630.2.1	2e-97	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	4e-57	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]