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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g09100 | ||||||||
Common Name | GSCOC_T00040306001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | BES1 | ||||||||
Protein Properties | Length: 318aa MW: 33715.7 Da PI: 9.0567 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 216.2 | 7.7e-67 | 9 | 153 | 2 | 150 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslk 99 +sgr ptwkErEnnkrRERrRRaiaaki+aGLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg kp+ e +g+sas+s +ss+q s+ Cc07_g09100 9 SSGRLPTWKERENNKRRERRRRAIAAKIFAGLRAQGNYKLPKHCDNNEVLKALCSEAGWIVEDDGTTYRKGGKPP-LVELTGASASISACSSIQPSPA 105 89*************************************************************************.9********************* PP DUF822 100 ssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsssl 150 ss+++sp++sy+asp sssfpsps+ d+++ + +lp+l++l+++++sl Cc07_g09100 106 SSSFPSPAPSYHASPGSSSFPSPSRGDTNPP---SYILPFLHNLASIPNSL 153 ****************************987...599*****999998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.0E-62 | 9 | 133 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MTAAGGGSSS GRLPTWKERE NNKRRERRRR AIAAKIFAGL RAQGNYKLPK HCDNNEVLKA 60 LCSEAGWIVE DDGTTYRKGG KPPLVELTGA SASISACSSI QPSPASSSFP SPAPSYHASP 120 GSSSFPSPSR GDTNPPSYIL PFLHNLASIP NSLPPLRISN SAPVTPPLSS PTRGSKRKPD 180 WEPLSHIKLP PSLPHSLFAA SAPASPTRRQ HFTPATIPEC DESDISPVES ARWVSFQTAP 240 AAPSSPTFNL VKPATLQNHQ DVVDGRGQFP WGAGAQRGCG SEFAFESCTV KAWEGERAHE 300 IGVDDLELTL GSGKAHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-24 | 12 | 92 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-24 | 12 | 92 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-24 | 12 | 92 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-24 | 12 | 92 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074039.1 | 0.0 | BES1/BZR1 homolog protein 2 | ||||
Swissprot | Q94A43 | 1e-103 | BEH2_ARATH; BES1/BZR1 homolog protein 2 | ||||
TrEMBL | A0A068U2N4 | 0.0 | A0A068U2N4_COFCA; Uncharacterized protein | ||||
STRING | XP_009765795.1 | 1e-132 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9486 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 3e-79 | BES1 family protein |