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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g07970 | ||||||||
Common Name | GSCOC_T00040159001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25399.9 Da PI: 9.5233 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.5 | 1.5e-27 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n++ rqvtfskRrng+lKKA+EL vLCdaev v+ifsst klyey+ Cc07_g07970 10 RIDNSTSRQVTFSKRRNGLLKKAKELAVLCDAEVGVVIFSSTSKLYEYA 58 8***********************************************8 PP | |||||||
2 | K-box | 80.4 | 4.3e-27 | 84 | 169 | 12 | 97 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ + +q+e++ L+++++nLq+ +R+l+Ge+L Ls+k+Lq Le+qLe sl+ iR kK+++l+++i+el +k +++en +L kk Cc07_g07970 84 SEVKFWQREATILRQQLHNLQEIHRQLMGEELYGLSVKDLQGLENQLEMSLRGIRMKKEQILTDEIRELHRKGCLIHQENVELYKK 169 67899******************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.062 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.20E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.97E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-26 | 85 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.603 | 86 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAVLCD AEVGVVIFSS TSKLYEYANT 60 SMKSVLERYS KAKEERHQLL SPPSEVKFWQ REATILRQQL HNLQEIHRQL MGEELYGLSV 120 KDLQGLENQL EMSLRGIRMK KEQILTDEIR ELHRKGCLIH QENVELYKKA YSTTNSNATH 180 GNTITPYGFA ITEEQHAPIH LQLSQPESQN FVTSEGTSES R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-22 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 5e-22 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 5e-22 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 5e-22 | 1 | 74 | 1 | 74 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU332280 | 0.0 | GU332280.1 Coffea arabica MADS-box protein AGL17 subfamily (C18) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027076501.1 | 1e-162 | MADS-box transcription factor 23-like isoform X2 | ||||
Swissprot | Q6EP49 | 6e-97 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A068U350 | 1e-162 | A0A068U350_COFCA; Uncharacterized protein | ||||
STRING | XP_009786108.1 | 1e-115 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-96 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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