PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 30984 Da PI: 8.2816

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g07540	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	134	188	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k Cc07_g07540 134 RKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 188 678899***********************************************98 PP
2	HD-ZIP_I/II	122.6	1.9e-39	134	223	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Cc07_g07540 134 RKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 223 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-18	123	191	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-17	127	193	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.362	130	190	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	132	194	IPR001356	Homeobox domain
Pfam	PF00046	4.1E-16	134	188	IPR001356	Homeobox domain
CDD	cd00086	6.18E-16	134	191	No hit	No description
PROSITE pattern	PS00027	0	165	188	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.3E-10	190	224	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.3E-24	190	233	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGLDDVCSPG LVLGLGFPST AENKPLKTDN QKSRKPSLLK SEQLANFEPS LTLSLSGGDT 60 FDMLVKKLDA TANKASNNEP PPSAADLHRQ DSAASSFSNN SVKRERELGS SEEVEIERLS 120 SRVSDEDDDG SNGRKKLRLT KVQSALLEES FKQHSTLNPK QKQDLARELN LRPRQVEVWF 180 QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELQEL KALKLAQPLY MQLPAATLTM 240 CPSCERVGGV GENSSSKSPF SMAPKPHFFN PFTNPSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	190	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075542.1	0.0	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-95	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A068U3C2	0.0	A0A068U3C2_COFCA; Uncharacterized protein
STRING	EOX91792	1e-138	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	6e-86	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]