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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g07150 | ||||||||
Common Name | GSCOC_T00040052001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB_related | ||||||||
Protein Properties | Length: 297aa MW: 32230 Da PI: 8.1691 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.3 | 1.3e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +++++G g W+tI + R+ ++k++w++ Cc07_g07150 5 KQKWTPEEEAALKAGIAKYGVGKWSTILKDPEfsavlRSRSNVDLKDKWRN 55 79************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.462 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.23E-16 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-9 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 5 | 55 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.76E-20 | 6 | 57 | No hit | No description |
SMART | SM00526 | 1.3E-14 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 3.81E-15 | 118 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 23.368 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.3E-15 | 122 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.8E-9 | 125 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MGAPKQKWTP EEEAALKAGI AKYGVGKWST ILKDPEFSAV LRSRSNVDLK DKWRNINVMA 60 NGWGSRQRGR PGYKIAQQTA KLEDITRDLS PVVTNVPELV DAEPLSVISV KEPNSSSKTP 120 ISRLDDLILE AIAKLKEPRG SNRAAISLYI EERYLTPPNF ERLLAANLKL LTEKGRLIKV 180 KHQYRIAPTS ATIDLGIDPP PLLLEVVQKD SSNGEKKGTK VLTKAQIDAE LERLRSMTAA 240 EAAAAAAQAV AEAEAAIAEA EVAAREAEEA EAEAEAAQCF AEAALKALKC RTVLVW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075217.1 | 0.0 | single myb histone 6-like isoform X1 | ||||
Refseq | XP_027079170.1 | 0.0 | single myb histone 6-like isoform X1 | ||||
Refseq | XP_027079171.1 | 0.0 | single myb histone 6-like isoform X1 | ||||
Refseq | XP_027179811.1 | 0.0 | single myb histone 6 isoform X1 | ||||
TrEMBL | A0A068U243 | 0.0 | A0A068U243_COFCA; Uncharacterized protein | ||||
STRING | Solyc02g064630.2.1 | 6e-96 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5122 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-66 | telomere repeat binding factor 1 |