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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g05280 | ||||||||
Common Name | GSCOC_T00039795001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | TALE | ||||||||
Protein Properties | Length: 379aa MW: 41517.4 Da PI: 8.1417 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.7 | 1.1e-09 | 139 | 176 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Cc07_g05280 139 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 176 665559******************************88 PP | |||||||
2 | BELL | 95.7 | 4.1e-31 | 17 | 71 | 18 | 72 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+ Cc07_g05280 17 QVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIATQL 71 7***************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-9 | 1 | 69 | IPR006563 | POX domain |
Pfam | PF07526 | 4.6E-27 | 17 | 68 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 117 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 120 | 184 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.98E-12 | 120 | 181 | No hit | No description |
SuperFamily | SSF46689 | 1.28E-17 | 121 | 187 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-29 | 123 | 186 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.6E-18 | 137 | 176 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MLDEAPKFRR VSRNIIQVDR RYNHYCEQMQ MVVNSFDLVM GFGAAVPYTA LAQKAMSRHF 60 RCLKDAIATQ LKHSCELLGE KDAGTSGVTK GETPRLKLLE QSLRQQRAFH QMGMMEQEAW 120 RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP 180 MVEEMYQQEA KEEAEEREPS QSNGSNIAQT PTPNATTTTT PSSTAATTTA TTATATETTA 240 AAAAAITATG KRSEINDSEN DPSFFAINRQ CFSENQAKNN CSSATSTSIM SISTSLATQT 300 ATVKPPTMSS QSFPTAYDSE AACRRSGIVT SANAEMGSTF IRFGTSAGDV SLTLGLRHAG 360 NLPENSSTTF SVRDFGGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-17 | 126 | 184 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-17 | 126 | 184 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 5e-17 | 126 | 184 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 5e-17 | 126 | 184 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027078946.1 | 0.0 | BEL1-like homeodomain protein 2 | ||||
Refseq | XP_027078947.1 | 0.0 | BEL1-like homeodomain protein 2 | ||||
Swissprot | Q9SW80 | 1e-130 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A068U484 | 0.0 | A0A068U484_COFCA; Uncharacterized protein | ||||
STRING | VIT_04s0023g01020.t01 | 1e-168 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3341 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-110 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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