 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc07_g04750 |
| Common Name | GSCOC_T00039735001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
CO-like |
| Protein Properties |
Length: 394aa MW: 43586.4 Da PI: 6.3361 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc07_g04750 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 19.7 | 1.8e-06 | 17 | 57 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
r+C+++ + + +C+ ++ +lC C +H H+
Cc07_g04750 17 RVCDTCRSAACTVYCRADSAYLCTGCDARIHAAnkvasrHE 57
79******99*********************6556666676 PP
|
| 2 | zf-B_box | 29.9 | 1.2e-09 | 59 | 104 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
++C+ +e+ ++ + C+ + lC+ C + +H+ H +vp+
Cc07_g04750 59 VWVCEACERAPAAFLCKADAASLCAACDSDIHSAnplarrHHRVPI 104
689*****************************66899999877775 PP
|
| 3 | CCT | 71 | 2.9e-24 | 324 | 367 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
Cc07_g04750 324 REAKVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 367
9*****************************************87 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering |
| GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering |
| GO:0005622 | Cellular Component | intracellular |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MLKQEDTNGG GANTWARVCD TCRSAACTVY CRADSAYLCT GCDARIHAAN KVASRHERVW 60
VCEACERAPA AFLCKADAAS LCAACDSDIH SANPLARRHH RVPILPIPGT LYGPPATDPG 120
GSMIGQDTED ADDGFLTQDV DETIDENDED EAASWLLLNP VKNNSHHHHH HQNNNSNNNM 180
LFGGEVVDEY LDLVEYSSCQ ENQYTSHHQY SNQQQHYAVP QKSYGGDSVV PVRSGGAKDQ 240
LQLQHQHHQS FQLGLEYEAS NTGYAYPVSS MSHSVSISSM DCGVVPESTM SDVSISHHRP 300
PKGTIDLFAS PPIQMPQQLT PMDREAKVLR YREKKKTRKF EKTIRYASRK AYAETRPRIK 360
GRFAKRTDVE VEVDQMLSTA LMVESGYGIV PSF*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription factor. Does not affect flowering time. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ955600 | 0.0 | JQ955600.1 Coffea arabica constans-like protein (COL) mRNA, complete cds. |
