PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g04540

Common Name

GSCOC_T00039710001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 281aa MW: 31058.2 Da PI: 4.5198

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g04540	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.4e-05	27	59	31	55
...........TTS-STCHHHHHHHHHHHHHHH CS HLH 31 s........kapskKlsKaeiLekAveYIksLq 55 s k++++K +Ka+ L ++++YI+ Lq Cc07_g04540 27 SsqkvkvegKGNDQKRDKASFLLEVIQYIQFLQ 59 346666666899********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.7E-8	38	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.03E-6	38	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MVRTSKSRQE DDDFDDEEFA SSTPENSSQK VKVEGKGNDQ KRDKASFLLE VIQYIQFLQE 60 RIQMYEETYQ GWNQEPSKLI PWRSNSGLIE NFVDQPLLMR NGSGHEDNII VSPTLLSNAQ 120 TAMDSELNGA PLCTPTDHPQ QSGNEENSSN LLVQPNLFHV VSTQPPQGSF PDPEHLATHS 180 PSEYWQGKLT ASECAVPSYK TSQREQLHPD SGEASISNVY SQGLLNTLKH ALQSSGVDLS 240 QVNISVQLDV GKRTNEGTAS TVIREVSSAF FTPLSISLKM *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027076362.1	0.0	transcription factor BIM2-like isoform X1
TrEMBL	A0A068U2E3	0.0	A0A068U2E3_COFCA; Uncharacterized protein
STRING	XP_009594724.1	8e-75	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8947	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-37	BES1-interacting Myc-like protein 2