PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g04450
Common NameGSCOC_T00039701001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26549.5 Da    PI: 10.0204
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g04450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.3e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Cc07_g04450  9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYST 59
                 79***********************************************96 PP
2K-box96.93.2e-328717413100
        K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++ +++ e+ kL ++ie Lqr+++h++GedL+sLsl+eLq LeqqL+ +l++iR++Kn++++e+i el+kkek lqe+n  L k+++e
  Cc07_g04450  87 QQDNWSLEHPKLVSRIELLQRNIKHYVGEDLDSLSLRELQTLEQQLDAALRRIRTRKNQVMHESIAELRKKEKTLQEQNGLLAKQIKE 174
                  6789*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-32280IPR002100Transcription factor, MADS-box
CDDcd002655.07E-39276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-2887172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.1388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD AEVALIVFST KGKLFEYSTE  60
SSMERILERY ERYSYAEKRL SGSGPGQQDN WSLEHPKLVS RIELLQRNIK HYVGEDLDSL  120
SLRELQTLEQ QLDAALRRIR TRKNQVMHES IAELRKKEKT LQEQNGLLAK QIKENDKIVM  180
ERLHLIQRSS ALVLSEPAPG SVPVPSLAAG YNYNLRDSLS IFCANIHHVY C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-21174173MEF2 CHIMERA
6byy_B8e-21174173MEF2 CHIMERA
6byy_C8e-21174173MEF2 CHIMERA
6byy_D8e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074837.11e-149truncated transcription factor CAULIFLOWER A-like
RefseqXP_027074839.11e-149truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S77e-97AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A068U1D01e-168A0A068U1D0_COFCA; Uncharacterized protein
STRINGcassava4.1_029935m1e-95(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]