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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g04450 | ||||||||
Common Name | GSCOC_T00039701001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26549.5 Da PI: 10.0204 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.5 | 4.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ Cc07_g04450 9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 96.9 | 3.2e-32 | 87 | 174 | 13 | 100 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ +++ e+ kL ++ie Lqr+++h++GedL+sLsl+eLq LeqqL+ +l++iR++Kn++++e+i el+kkek lqe+n L k+++e Cc07_g04450 87 QQDNWSLEHPKLVSRIELLQRNIKHYVGEDLDSLSLRELQTLEQQLDAALRRIRTRKNQVMHESIAELRKKEKTLQEQNGLLAKQIKE 174 6789*********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.931 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-32 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.07E-39 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.7E-28 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.13 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD AEVALIVFST KGKLFEYSTE 60 SSMERILERY ERYSYAEKRL SGSGPGQQDN WSLEHPKLVS RIELLQRNIK HYVGEDLDSL 120 SLRELQTLEQ QLDAALRRIR TRKNQVMHES IAELRKKEKT LQEQNGLLAK QIKENDKIVM 180 ERLHLIQRSS ALVLSEPAPG SVPVPSLAAG YNYNLRDSLS IFCANIHHVY C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 8e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 8e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 8e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074837.1 | 1e-149 | truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_027074839.1 | 1e-149 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 7e-97 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A068U1D0 | 1e-168 | A0A068U1D0_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_029935m | 1e-95 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 3e-89 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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