PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g04000
Common NameGSCOC_T00039650001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 850aa    MW: 92699 Da    PI: 7.2147
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g04000genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019114134323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C+ Cgk F+++  L  H+rtH
  Cc07_g04000 114 CKECGKWFPSSRALAGHMRTH 134
                  ********************9 PP
2zf-C2H212.90.00033142164123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cgk F +   +  H+++H
  Cc07_g04000 142 HPCKKCGKAFDSMRAMYGHMKSH 164
                  78*******************99 PP
3zf-C2H211.40.001489511123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+Fs+   L  H r H
  Cc07_g04000 489 HECPICFKVFSTGQALGGHKRAH 511
                  79*************99999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.3931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.863112139IPR007087Zinc finger, C2H2
SMARTSM003550.0025112134IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.28E-10113164No hitNo description
PfamPF139122.6E-5113136IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-7114137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.3E-5141166IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346142169IPR007087Zinc finger, C2H2
SMARTSM003550.0053142164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-6419443No hitNo description
PROSITE profilePS501579.016421443IPR007087Zinc finger, C2H2
SMARTSM003550.17421443IPR015880Zinc finger, C2H2-like
PfamPF139120.063421444IPR007087Zinc finger, C2H2
PROSITE patternPS000280423443IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-6484511No hitNo description
PROSITE profilePS501579.328489511IPR007087Zinc finger, C2H2
SMARTSM003550.25489511IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-10489513IPR007087Zinc finger, C2H2
PROSITE patternPS000280491511IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-8695732No hitNo description
SMARTSM004517.9E-4696730IPR003604Zinc finger, U1-type
SMARTSM0035575699723IPR015880Zinc finger, C2H2-like
PfamPF128741.6E-6700723No hitNo description
PROSITE patternPS000280701723IPR007087Zinc finger, C2H2
SMARTSM004510.055802836IPR003604Zinc finger, U1-type
SuperFamilySSF576671.64E-8802837No hitNo description
SMARTSM003555.7805829IPR015880Zinc finger, C2H2-like
PfamPF128742.0E-7806829No hitNo description
PROSITE patternPS000280807829IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MEEVQEQKFV CKFCNKCCFS GKSLGGHMRR HLALIAAAKK EKVKADINAG FGGGYDHDDH  60
HDHEKVDNHS SSMNLENDDH DQDQDNYGLR ENPKKSWKIS DLRACGPPRK GNICKECGKW  120
FPSSRALAGH MRTHSGKFKG RHPCKKCGKA FDSMRAMYGH MKSHPKRSRV SSESADAISD  180
FDIVYPRKKR SVMRYKSSHS FSYSTANASS SLNENDEVED AAICLMMLSR GVSNWDGVDC  240
PLVYTDNATS AYFEAKSVSL PEESTKVDAE DVVGNPDEVE MPEKPIEELY SCFFGSANSL  300
SNQNVSQFNE LSSEFASGNE KKAELEFRVY EPLCRGEPNE SRLLDVSGVE LDGSDSAGVV  360
EPLKDQSKAV GMDQEDIQLM DPNPCKKVEI NAHAPELEIC SSDRADTADE IFKISEKKRE  420
YRCRACNMSF SSHRALGGHS NKHKTNGHCS ASGTESSHLT DIECNGTSAE AGSDGVAMAD  480
LQLTKTKDHE CPICFKVFST GQALGGHKRA HYAGFSESRT KEMTAANQEL RDIQNVFDLN  540
LPGITHPGAR DDGISLKAWY EPLRAQVLDT LCGRHTITYS LPSHFDIQPP GVDPSTPVTV  600
KPIGSHVPSG YEAPQLSLAY TYSQAMASAS APYYQDPNAA ITPYCLNTYA EGITMPSTAA  660
QKLVTANSGS ILWTNSTTGS HKTSAWKKCP KKIKVVQSAW CEICRVDCNS KNVLDQHKLG  720
KKHKKNLEKL IVANTSMVAP ATISASVPPA ASTVSDNPVI GPQENPDKAK SAVSQNGRKK  780
AADAEDLETK RKKIVEGGAA VDAVRTCAIC NVVCNSETVF RYHLAGQKHA AMMKKHAQHA  840
FATGVAAAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1777792RKKAADAEDLETKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151144.10.0uncharacterized protein LOC113751362
TrEMBLA0A068U1890.0A0A068U189_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-18C2H2-like zinc finger protein