PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g03570

Common Name

GSCOC_T00039597001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 332aa MW: 37390.2 Da PI: 5.8573

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g03570	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.7e-55	16	140	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv + ++++ +i evd++kvePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ ++ Cc07_g03570 16 LPPGFRFHPTDEELITHYLSPKVLDYSFSA-IAIGEVDLNKVEPWDLPWRAKLGEKEWYFFCVRDRKYPTGMRTNRATDAGYWKATGKDKEIFK-VKK 111 79***********************999.88***********888999************************************.899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 lvg+kktLvfykgrapkgekt+Wvmheyr Cc07_g03570 112 LVGMKKTLVFYKGRAPKGEKTNWVMHEYR 140 **************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-63	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.369	16	166	IPR003441	NAC domain
Pfam	PF02365	2.7E-29	17	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MENVSAVTDD DEKMELPPGF RFHPTDEELI THYLSPKVLD YSFSAIAIGE VDLNKVEPWD 60 LPWRAKLGEK EWYFFCVRDR KYPTGMRTNR ATDAGYWKAT GKDKEIFKVK KLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR PEGKNSIHGA SKAEKNEWVI CRIFKKSSEG KKIHISGLTR 180 ATNCRDDSSS SELPPLMDLS SDEAQTRTTV AEASNVTCFS DPMEAEDQKP QYADLINTPY 240 ATLASNISAF SPASLISPKF STPNSILSAQ IMPHMDHLHY SDSVFMQDHS ILKLLFDDYE 300 SNGNAKSEVS QSTECPITSA GPVDLECLWN Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-59	8	172	9	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-59	8	172	9	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-59	8	172	9	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-59	8	172	9	171	NO APICAL MERISTEM PROTEIN
4dul_A	7e-59	8	172	9	171	NAC domain-containing protein 19
4dul_B	7e-59	8	172	9	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027152794.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-112	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A068U1T7	0.0	A0A068U1T7_COFCA; Uncharacterized protein
STRING	EOY03521	1e-144	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-115	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]