PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g03470

Common Name

GSCOC_T00039578001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 513aa MW: 55302.5 Da PI: 5.5248

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g03470	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	147	207	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Cc07_g03470 147 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSV 207 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	144	204	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-32	149	205	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	151	205	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	153	189	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MSEAKDPAIK LFGKTIQLPE APAAAAASEC GGDASALSND ISPDDTLVQD RPSSPNSLPE 60 DSNLDRSGAE EESDKDFSGE KGNDSKTEDG AQSMMPEELI DPTLSSLTKE SSKAPSVDSE 120 AAPAKASKAE DEQNETSNSQ DKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN 180 CQRYWTAGGT MRNVPVGAGR RKNKNSVSQY RHISVSETLH NSQPDLPNGI HHPTLKPNGT 240 VLTFGSDAPL CESMASVLNI AEKTMQNCTR NGFHRPEELR IPVPYGTGGN GDEHLSGSSV 300 TTLSSKDEAA KDSLPDKQMP NCQSISPQVP CFPGAPWPPY PWNAVPWGSS VPPAAFCPPG 360 FPMQFYPAAP YWGCTVPGTW TVPWLSPPPT SQNLNSRTSG PNSPTLGKHS RDDSIMKPVD 420 SKKEEPQKES NPEKCLWVPK TLRIDDPGEA ARSSIWATLG IKIDKVDSVG GAGLFKAFQP 480 KGDEKTRVSE TSTVLQANPA ALSRSLSFHE TS*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MSEAKDPAIK LFGKTIQLPE APAAAAASEC GGDASALSND ISPDDTLVQD RPSSPNSLPE  60
DSNLDRSGAE EESDKDFSGE KGNDSKTEDG AQSMMPEELI DPTLSSLTKE SSKAPSVDSE  120
AAPAKASKAE DEQNETSNSQ DKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN  180
CQRYWTAGGT MRNVPVGAGR RKNKNSVSQY RHISVSETLH NSQPDLPNGI HHPTLKPNGT  240
VLTFGSDAPL CESMASVLNI AEKTMQNCTR NGFHRPEELR IPVPYGTGGN GDEHLSGSSV  300
TTLSSKDEAA KDSLPDKQMP NCQSISPQVP CFPGAPWPPY PWNAVPWGSS VPPAAFCPPG  360
FPMQFYPAAP YWGCTVPGTW TVPWLSPPPT SQNLNSRTSG PNSPTLGKHS RDDSIMKPVD  420
SKKEEPQKES NPEKCLWVPK TLRIDDPGEA ARSSIWATLG IKIDKVDSVG GAGLFKAFQP  480
KGDEKTRVSE TSTVLQANPA ALSRSLSFHE TS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074815.1	0.0	cyclic dof factor 2-like isoform X2
Refseq	XP_027150675.1	0.0	cyclic dof factor 2-like isoform X2
TrEMBL	A0A068U1T1	0.0	A0A068U1T1_COFCA; Uncharacterized protein
STRING	VIT_14s0108g00980.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-103	cycling DOF factor 2