PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g03350 | ||||||||
Common Name | GSCOC_T00039562001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 325aa MW: 35773.7 Da PI: 6.9987 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+++G+g+W++++ g++R+ k+c++rw +yl Cc07_g03350 14 KGPWTPEEDIMLVTYVQEHGPGNWRAVPDNTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Cc07_g03350 67 RGNFTDQEEKMIIQLQALLGNK-WAAIAAYLP-ERTDNDIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.629 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.91E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.64E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.878 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.66E-11 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDIMLVTYVQ EHGPGNWRAV PDNTGLRRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIAAYLPERT DNDIKNFWNT HLKKKLKKLQ 120 TGSDSSSARN ALSSSHSISK GQWERRLQTD IKTAKQALHD ALSLEGSIPA PDSKPCDGHR 180 SYTEPGQGSS TYASSTENIA RLLKGWVKNP SPRKSEQSKS SSTQQSFCNA ATDCTSSDGT 240 PSAESKSGID LSEAFESLFG FESFESSTSE FSQSTSPEAS IFQGESKPDQ GGAQVPFSML 300 LENWLLDGKD DLTNFPFEET ANLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00395 | DAP | Transfer from AT3G47600 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027153376.1 | 0.0 | myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-102 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A068U129 | 0.0 | A0A068U129_COFCA; Uncharacterized protein | ||||
STRING | XP_009629125.1 | 1e-148 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 1e-88 | myb domain protein 30 |
Publications ? help Back to Top | |||
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