PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g03350
Common NameGSCOC_T00039562001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 325aa    MW: 35773.7 Da    PI: 6.9987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g03350genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +v+++G+g+W++++   g++R+ k+c++rw +yl
      Cc07_g03350 14 KGPWTPEEDIMLVTYVQEHGPGNWRAVPDNTGLRRCSKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding48.22.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
      Cc07_g03350  67 RGNFTDQEEKMIIQLQALLGNK-WAAIAAYLP-ERTDNDIKNFWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.629965IPR017930Myb domain
SuperFamilySSF466897.91E-3111108IPR009057Homeodomain-like
SMARTSM007172.8E-151363IPR001005SANT/Myb domain
PfamPF002491.2E-161461IPR001005SANT/Myb domain
CDDcd001673.64E-121661No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2565117IPR009057Homeodomain-like
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.87866116IPR017930Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
CDDcd001677.66E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIMLVTYVQ EHGPGNWRAV PDNTGLRRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIAAYLPERT DNDIKNFWNT HLKKKLKKLQ  120
TGSDSSSARN ALSSSHSISK GQWERRLQTD IKTAKQALHD ALSLEGSIPA PDSKPCDGHR  180
SYTEPGQGSS TYASSTENIA RLLKGWVKNP SPRKSEQSKS SSTQQSFCNA ATDCTSSDGT  240
PSAESKSGID LSEAFESLFG FESFESSTSE FSQSTSPEAS IFQGESKPDQ GGAQVPFSML  300
LENWLLDGKD DLTNFPFEET ANLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
1mse_C1e-25141164105C-Myb DNA-Binding Domain
1msf_C1e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027153376.10.0myb-related protein 306-like
SwissprotP813921e-102MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A068U1290.0A0A068U129_COFCA; Uncharacterized protein
STRINGXP_009629125.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-88myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]