PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g03280 | ||||||||
Common Name | GSCOC_T00039554001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26560.8 Da PI: 7.0264 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.1 | 2.1e-05 | 31 | 63 | 1 | 34 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskap 34 +r + erE++ Rd++N f eLr+ + +a + Cc07_g03280 31 KRIHKAEREKKKRDHMNVLFVELRKAIEPAQ-LS 63 688899*********************9973.23 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-10 | 21 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 27 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.93E-5 | 28 | 84 | No hit | No description |
PROSITE profile | PS50888 | 10.531 | 30 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MASETAIPDG DEGNAVHRHS SSKKKQGKPS KRIHKAEREK KKRDHMNVLF VELRKAIEPA 60 QLSSGKACIV NDTIRLLKDL LAQVDSLKKD NAALLSESHY VAVEKNELIE ENSALKSQVE 120 KLQSEITERT QSQSSVNLNI WPSQSPIAAS ELQEDSLRLP STDHQLLSSS VVAPIFVVPL 180 HHDSPIYHKG SQNDTAEDFQ CNAFLSNVKK PRPRYPSPSD SWPSQILDEQ LSGREITQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 42 | KKKQGKPSKRIHKAEREKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073951.1 | 1e-171 | transcription factor bHLH47-like isoform X2 | ||||
Refseq | XP_027073952.1 | 1e-171 | transcription factor bHLH47-like isoform X2 | ||||
Refseq | XP_027153377.1 | 1e-171 | transcription factor bHLH47-like | ||||
Refseq | XP_027153378.1 | 1e-171 | transcription factor bHLH47-like | ||||
TrEMBL | A0A068U3Q9 | 1e-173 | A0A068U3Q9_COFCA; Uncharacterized protein | ||||
STRING | VIT_14s0108g00480.t01 | 2e-60 | (Vitis vinifera) | ||||
STRING | XP_010258393.1 | 1e-61 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 5e-38 | bHLH family protein |