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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc07_g03210 |
| Common Name | GSCOC_T00039542001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
HD-ZIP |
| Protein Properties |
Length: 246aa MW: 27704.1 Da PI: 5.214 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc07_g03210 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58 | 1.6e-18 | 31 | 83 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k
Cc07_g03210 31 KKRLNLEQVKVLEKSFELGSKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 83
4568889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 123.2 | 1.3e-39 | 29 | 120 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekk+rl+ eqvk+LE+sFe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkq+Ekdye+Lkr+++ lk++ne L++++++ ++el
Cc07_g03210 29 EKKKRLNLEQVKVLEKSFELGSKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQMEKDYEVLKRQVEILKADNELLRAQNKRFHSELV 120
69************************************************************************************999986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MSFSGVDMSE EALRLEDDMS DDGAAPLGEK KKRLNLEQVK VLEKSFELGS KLEPERKMQL 60
ARALGLQPRQ VAIWFQNRRA RWKTKQMEKD YEVLKRQVEI LKADNELLRA QNKRFHSELV 120
ALQSVELSAA VEPINLNNRE NEASWSSGSR ENSIDVNLGT TSVETGLIIP NSHPTSNHMP 180
FPSTMEQPAV GPTHHLLQAS LGPDLQGPRI DQTTSDEALC NAFNNIEEQP SFSPWSTWPN 240
QQNFR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
