PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 174aa MW: 19176.4 Da PI: 7.3347

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g01770	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.4	6e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++ Cc07_g01770 10 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQKELDATN 107 7*********************************************************************************************9987 PP DUF260 99 e 99 + Cc07_g01770 108 A 108 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.626	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-43	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MASSSYSNSP CAACKFLRRK CLPGCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEIQP 60 HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL MRYASNEMPQ 120 GYPGNSGSNQ MGRRMNNAGS SFGQYEYPSP YYMSSWDNSF SGDHPDKPGD SNT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-68	7	118	8	119	LOB family transfactor Ramosa2.1
5ly0_B	3e-68	7	118	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG964666	0.0	HG964666.1 Coffea arabica clone BAC 126-3E, cultivar IAPAR 59.
GenBank	HG964667	0.0	HG964667.1 Coffea arabica clone BAC 144-23N, cultivar IAPAR 59.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073953.1	1e-127	LOB domain-containing protein 25-like
Refseq	XP_027101865.1	1e-127	LOB domain-containing protein 25-like
Refseq	XP_027154136.1	1e-127	LOB domain-containing protein 25
Swissprot	Q8L8Q3	1e-69	LBD25_ARATH; LOB domain-containing protein 25
Swissprot	Q9FML4	1e-69	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A068U181	1e-126	A0A068U181_COFCA; Uncharacterized protein
STRING	POPTR_0001s35280.1	8e-85	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	5e-72	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]