PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g01550
Common NameGSCOC_T00039327001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 401aa    MW: 44360.3 Da    PI: 5.5706
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g01550genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.4e-32551971128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 
                  lp+G++F+P+d el+ e+L++k+   + e ++    +i++++    i++++P++Lp  +k++ ++++fF ++ ++yatg+rk+r+         ++ +
  Cc07_g01550  55 LPAGVKFDPSDVELL-EHLAAKCGVGNSESHKfideFIPTLEghegICYTHPENLP-GAKKDGSSVHFFYRTTNAYATGQRKRRKiqiensliKEQVR 150
                  799************.99*999887774443322232333323444**********.556778899******************86777777666999 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk+k+v++ +g ++g+kk++v+y  ++r +k+ k++Wvmh+y+l
  Cc07_g01550 151 WHKTGKTKTVMD-NGIQKGCKKIMVLYrtSNRGSKPDKSNWVMHQYHL 197
                  ************.99************5545888889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3740216IPR003441NAC domain
PROSITE profilePS5100530.25555216IPR003441NAC domain
PfamPF023651.1E-1256197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MARSWVIDSR GLATKVKNAT LPTAHQIKDC GANRECPKCH YIIDNSDICH EWPGLPAGVK  60
FDPSDVELLE HLAAKCGVGN SESHKFIDEF IPTLEGHEGI CYTHPENLPG AKKDGSSVHF  120
FYRTTNAYAT GQRKRRKIQI ENSLIKEQVR WHKTGKTKTV MDNGIQKGCK KIMVLYRTSN  180
RGSKPDKSNW VMHQYHLGSD EDEKEGQYVV SKIFYQQHKQ QSDKHNAYDG SPSILDYDIG  240
TSRTSPRTPK IVTPNPPRPG ETPSFDDATD DYSMQPSFQE MGFAKEALNS SSSDAQVKDK  300
TEHNTWLAGE SQAADVNGVD ELLLCNEIID SSILSSDFGL DGGPFSGLTR NTNDVPQVVG  360
SSACGIAELE NLELDSPPDF QLGDLNFGSQ DSVFSWLDKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027153820.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A068U0I60.0A0A068U0I6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000328290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81752229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.12e-96NAC domain containing protein 44