PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g21990
Common NameGSCOC_T00015614001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 290aa    MW: 32880.9 Da    PI: 6.1838
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g21990genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK46.66.5e-15127171448
       RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 
                  ei+ e+l+++   +++dAAk++gv  ++LKriCR+yGI+R P  k
  Cc06_g21990 127 EITREVLEQNSMRKLEDAAKNIGVNRSTLKRICREYGIRRRPPHK 171
                  799************************************998544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.809109198IPR003035RWP-RK domain
PfamPF020423.4E-12128174IPR003035RWP-RK domain
SuperFamilySSF542773.27E-16202288No hitNo description
Gene3DG3DSA:3.10.20.2401.2E-15207288No hitNo description
SMARTSM006661.5E-11209289IPR000270PB1 domain
PROSITE profilePS5174514.359209289IPR000270PB1 domain
PfamPF005642.1E-14212288IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MQGDFSSQQV DTANACINGV HPQQGGIVGS PPRPEHVHGF INMSNQEFYF AGVDVAHKSM  60
NGIYEQQNGI VRSTTGRELV QNVVSIEDHE PIVEDPERDD ASIEQNGNEV TNLKKQEPSC  120
TLKSDLEITR EVLEQNSMRK LEDAAKNIGV NRSTLKRICR EYGIRRRPPH KERKVNQVFA  180
KQKAVQPATE NTEENHQSDA TRLEDDSSMW VIKAKYQEDK IKFELPSSAR KIDLEKNIAQ  240
RFNLSRGSFK IKYQDELNDW ILITCDTDLS FCMKTLSKLG RTTIEMLVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067679.11e-176protein NLP7-like
TrEMBLA0A068V4G90.0A0A068V4G9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4897426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.23e-15Nin-like family protein