PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g21940

Common Name

GSCOC_T00015608001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 429aa MW: 48878.2 Da PI: 6.4487

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g21940	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.1	5.3e-16	267	315	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++kdAAk L+v+ ++LKr+CR+y I+RWP+ k +++ Cc06_g21940 267 GITREVLEQNSWRSLKDAAKVLQVSRSTLKRRCREYDIDRWPSSKSRKV 315 6999**************************************9886665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.025	248	335	IPR003035	RWP-RK domain
Pfam	PF02042	4.8E-14	268	315	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	1.4E-4	279	305	IPR009057	Homeodomain-like
SuperFamily	SSF54277	2.52E-15	343	427	No hit	No description
PROSITE profile	PS51745	16.215	348	428	IPR000270	PB1 domain
SMART	SM00666	3.1E-10	348	428	IPR000270	PB1 domain
Pfam	PF00564	4.6E-13	349	427	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.3E-15	349	427	No hit	No description
CDD	cd05992	6.03E-16	349	428	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MDVYAWTSGD NQMGQDWFVD EAELFEMPNL LVDMAVGLLV SPPRLGPVVS VESPEISDAY 60 SLWENDTRIP HQMRGFRLDG CGFGSSQVFA ADGAPKRGKI LGLLLEDLFR SRELRELRER 120 ERELVLLKKG NKTCLTTRAQ PFHYYSHQDF KKPCDVHGQQ RGIVGSPIRP ERTQGFINIP 180 FPNLNLAGVD VAHNSVSGIY EHQYGVVESP HRQELLQNIE NIAHDEGNME IDVANPERGG 240 ASIEPRDSEV INIKRQKSSH TLKSKLGITR EVLEQNSWRS LKDAAKVLQV SRSTLKRRCR 300 EYDIDRWPSS KSRKVNQAIA EQRVVQPSTE NTEEQHRPDT TRLEDGSSIW VKAEYQGYTM 360 KFRLPLSAHK FNLEEKVAQR LNLPIGSFKI EYQDEENEWI WIACDEDLST CMSTLSSLGR 420 TTIKMLVR*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MDVYAWTSGD NQMGQDWFVD EAELFEMPNL LVDMAVGLLV SPPRLGPVVS VESPEISDAY  60
SLWENDTRIP HQMRGFRLDG CGFGSSQVFA ADGAPKRGKI LGLLLEDLFR SRELRELRER  120
ERELVLLKKG NKTCLTTRAQ PFHYYSHQDF KKPCDVHGQQ RGIVGSPIRP ERTQGFINIP  180
FPNLNLAGVD VAHNSVSGIY EHQYGVVESP HRQELLQNIE NIAHDEGNME IDVANPERGG  240
ASIEPRDSEV INIKRQKSSH TLKSKLGITR EVLEQNSWRS LKDAAKVLQV SRSTLKRRCR  300
EYDIDRWPSS KSRKVNQAIA EQRVVQPSTE NTEEQHRPDT TRLEDGSSIW VKAEYQGYTM  360
KFRLPLSAHK FNLEEKVAQR LNLPIGSFKI EYQDEENEWI WIACDEDLST CMSTLSSLGR  420
TTIKMLVR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065974.1	0.0	protein NLP1-like isoform X1
TrEMBL	A0A068V4G3	0.0	A0A068V4G3_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-12	NIN like protein 7