PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g21910 | ||||||||
Common Name | GSCOC_T00015604001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Nin-like | ||||||||
Protein Properties | Length: 173aa MW: 18915.1 Da PI: 6.1092 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 37.2 | 5.7e-12 | 131 | 172 | 2 | 43 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkR 43 e i+ e l++ +++ +AAk L+v ++LKr+CR+yGI R Cc06_g21910 131 ERGITRELLEQISTMNLVEAAKFLDVTRSTLKRKCREYGICR 172 567999**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.77E-5 | 131 | 170 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 131 | 170 | IPR009057 | Homeodomain-like |
Pfam | PF02042 | 5.8E-8 | 134 | 172 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MMQLDFSSQQ VDAANGQQNG VVGSPPRTEH AQGFVNISYQ ELMAVNFDAS NVAGVDAAKN 60 SMNGIYEQQN GIVGSSSGQE LLQNIVHVAH HEPILEFDVA NPSKDGANIK QSNNEETNSR 120 KQKSSCTLRS ERGITRELLE QISTMNLVEA AKFLDVTRST LKRKCREYGI CR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027174632.1 | 5e-63 | protein NLP7-like | ||||
TrEMBL | A0A068V521 | 1e-125 | A0A068V521_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4897 | 4 | 26 |