PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 302aa MW: 33976.2 Da PI: 6.5311

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g20620	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.5	4e-17	157	210	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ ++++LA++l+L rqV vWFqNrRa++k Cc06_g20620 157 RKKLCLTKAQSALLEESFKQHSTLNP-QKQDLARELNLRPRQVEVWFQNRRARMK 210 678899****************96.679*********************99 PP
2	HD-ZIP_I/II	111.4	6.1e-36	157	245	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+ l+k q++lLEesF+++++L+p +K++lareL+l+prqv+vWFqnrRAR+k+kq+E+dye+Lk++y+ l++en+rL+ke +eL+ +l Cc06_g20620 157 RKKLCLTKAQSALLEESFKQHSTLNP-QKQDLARELNLRPRQVEVWFQNRRARMKLKQTEVDYEFLKKCYEMLTDENRRLQKELQELK-AL 245 6999*******************9.689*******************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.27E-16	143	213	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-15	151	215	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.107	153	212	IPR001356	Homeobox domain
SMART	SM00389	7.2E-15	155	216	IPR001356	Homeobox domain
CDD	cd00086	4.37E-14	157	213	No hit	No description
Pfam	PF00046	1.3E-14	157	210	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	187	210	IPR017970	Homeobox, conserved site
SMART	SM00340	9.1E-22	212	255	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.9E-10	212	246	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MNFSTDLGEI KTTPSRIFAL FLRAAINQLE DSISANEKAI SEVKDSRTLT ALKDYDVLFR 60 DSLRPVNAFV TAMGVESDDK IFKTNVSFFP LTHSANKASN NEPPPSAADL HRQDSAASSF 120 SNNSVKRERE LGSSEEVEIE TVSSRVSDED DDGSNGRKKL CLTKAQSALL EESFKQHSTL 180 NPQKQDLARE LNLRPRQVEV WFQNRRARMK LKQTEVDYEF LKKCYEMLTD ENRRLQKELQ 240 ELKALKLVQP LYMQLTVATL TMCPSCERVD GVGENSSSKS PFSMAPKPHF FNSFTNPSTA 300 C*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	212	RRARMKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075542.1	1e-127	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-73	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A068UCT0	0.0	A0A068UCT0_COFCA; Uncharacterized protein
STRING	VIT_00s0732g00010.t01	1e-105	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	3e-62	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]