PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g19220
Common NameGSCOC_T00028975001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 143aa    MW: 15508 Da    PI: 10.2396
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g19220genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61e-151158148
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 k+ie +s r vtfskRr+g++KK  EL    +a+vavi+fs+ g+ y+
  Cc06_g19220 11 KKIEKESSRMVTFSKRRKGLFKKVRELQAKIGANVAVIVFSPAGNPYT 58
                 68*****************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-18362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.423363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-19465IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-14525IPR002100Transcription factor, MADS-box
PfamPF003193.3E-211258IPR002100Transcription factor, MADS-box
CDDcd001203.30E-151758No hitNo description
PRINTSPR004047.2E-142540IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-144061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGSGKKKIEI KKIEKESSRM VTFSKRRKGL FKKVRELQAK IGANVAVIVF SPAGNPYTIG  60
DVSLFDNALN KGTCPASGGA IFNGFDFKKG GKDANAFCAS TSNGLREWLN GIDVDGCSEI  120
EELLHMKEQL LVARERIQGL IR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067500.15e-86MADS-box transcription factor 23-like
TrEMBLA0A068UM662e-98A0A068UM66_COFCA; Uncharacterized protein
STRINGXP_009603478.12e-28(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.21e-12MIKC_MADS family protein