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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc06_g17660 |
| Common Name | GSCOC_T00040349001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
HSF |
| Protein Properties |
Length: 261aa MW: 29911.5 Da PI: 7.5818 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc06_g17660 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 111.2 | 7.2e-35 | 22 | 113 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl k+y ++ed++++e+isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv + + weF+++ F+kg+++ll++i+
Cc06_g17660 22 FLLKTYMLVEDPSTDEVISWNTEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATAR---------WEFSNDMFRKGERDLLCEIR 109
9****************************************************************999.........******************** PP
XXXX CS
HSF_DNA-bind 99 rkks 102
r+k
Cc06_g17660 110 RRKA 113
*985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046686 | Biological Process | response to cadmium ion |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MMEPECEKSL LEYVRKSSPP PFLLKTYMLV EDPSTDEVIS WNTEGTAFVV WQPAEFARDL 60
LPTLFKHSNF SSFVRQLNTY GFRKVATARW EFSNDMFRKG ERDLLCEIRR RKAWTNKSHS 120
NNNKGQQNHH HHHQAAAAAA APTKDQSDED QSQRSSSTSS SSDQYTVLID ENKRLKRENG 180
VLSTELSTMK KKCKELLDLV AVYADQAGEK NDGSIVDNDE FDERPKLFGV RLEVQGEIER 240
KRKFAEISRN AQVILFQSCK *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 5e-21 | 17 | 111 | 15 | 120 | Heat shock factor protein 1 |
| 5d5u_B | 6e-21 | 17 | 111 | 24 | 129 | Heat shock factor protein 1 |
| 5d5v_B | 6e-21 | 17 | 111 | 24 | 129 | Heat shock factor protein 1 |
| 5d5v_D | 6e-21 | 17 | 111 | 24 | 129 | Heat shock factor protein 1 |
| 5d8k_B | 4e-21 | 20 | 111 | 3 | 105 | Heat shock factor protein 2 |
| 5d8l_B | 4e-21 | 20 | 111 | 3 | 105 | Heat shock factor protein 2 |
| 5d8l_D | 4e-21 | 20 | 111 | 3 | 105 | Heat shock factor protein 2 |
| 5d8l_F | 4e-21 | 20 | 111 | 3 | 105 | Heat shock factor protein 2 |
| 5d8l_H | 4e-21 | 20 | 111 | 3 | 105 | Heat shock factor protein 2 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
